PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031326
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 344aa    MW: 39627.7 Da    PI: 6.7336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031326genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l+++v+++G+++W++Ia ++  gR++k+c++rw++ 
      Lus10031326  4 RGHWRPAEDEKLKELVERYGPHNWNAIADKLH-GRSGKSCRLRWYNQ 49
                     899*****************************.************96 PP
2Myb_DNA-binding54.23.4e-1756100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+  
      Lus10031326  56 RTPFTDEEEERLIASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHVM 100
                      679*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.858150IPR017930Myb domain
SMARTSM007171.3E-15352IPR001005SANT/Myb domain
SuperFamilySSF466897.81E-29497IPR009057Homeodomain-like
PfamPF002496.1E-17450IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-27557IPR009057Homeodomain-like
CDDcd001676.64E-14748No hitNo description
PROSITE profilePS5129425.47851105IPR017930Myb domain
SMARTSM007171.2E-1555103IPR001005SANT/Myb domain
PfamPF002497.0E-145699IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2058104IPR009057Homeodomain-like
CDDcd001671.58E-1158101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MCSRGHWRPA EDEKLKELVE RYGPHNWNAI ADKLHGRSGK SCRLRWYNQL DPRINRTPFT  60
DEEEERLIAS HRIHGNRWAV IARLFPGRTD NAVKNHWHVM MARRCRERSK SSSSGPSSVH  120
RNNSSCIATN MAADPRITAG STAMLNMMKS SSSSSHGGVA NYLQPGYRPF YYGNRQQDQA  180
TAKSLQQLAA SYVMNKCFNM FDAKKTTTQT TTRRFHPYHP HPHPHYLFPK DYYLMTQSHN  240
LLHQENEKEE KGPIEYYDFL QVHNNNENSN KSEVIDKTPD HLPQPGDEEE EEEEEDEEVD  300
QDDNDQSKLE GHDTLPTIKE ESDKVIGFID FLDVGTTRRA NPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-3211051105C-Myb DNA-Binding Domain
1msf_C7e-3211051105C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JMB27e-85A0A498JMB2_MALDO; Uncharacterized protein
STRINGLus100313260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-66myb domain protein 52