PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031314
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 462aa    MW: 50832.9 Da    PI: 8.3278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031314genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-067193123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Lus10031314 71 YVCEICNQGFQRDQNLQMHRRRH 93
                 9*********************9 PP
2zf-C2H215.93.7e-05148170123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C+k +  +s++k H++t+
  Lus10031314 148 WVCDKCNKGYAVQSDYKAHLKTC 170
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.77E-67093No hitNo description
Gene3DG3DSA:3.30.160.601.9E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977193IPR007087Zinc finger, C2H2
PfamPF128740.0237189No hitNo description
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355210112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5139169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.77E-6143168No hitNo description
SMARTSM0035549148175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MFCSNKNSSS SPPSDPFSSS SLDNNNCHES SSVAAAATSA AKRKRRPAGT PDPDAEVVSL  60
SPRTLMESDR YVCEICNQGF QRDQNLQMHR RRHKVPWKLL KRESPVVKKR VFVCPEPSCL  120
HHDPCHALGD LVGIKKHFRR KHSNQKQWVC DKCNKGYAVQ SDYKAHLKTC GTRGHSCDCG  180
RVFSRVESFI EHQDACTMGR QSHSPNFQQQ QQQPTACLSR TASSPSPSAE TAPWPMLVPS  240
PRQHHHQQQP PPHPPPQLDH HQQRGGGGRA ATSAFMSLPT ISTTTITESR GCEIHNLDLQ  300
LASSSSAVAA AAADHDDHSS AADAAATQLH LSVGSVSNTN HPIREVDARE EIRLAIAEKA  360
YAEEVRKEAK RQIQLAEEEF ANAKRTRQRA QAELDKAEAL KEHAMKQMNT TILQLTCASC  420
RQKLLMRQPG AAADENSSLV LSYVSSGITE QGEVMEKEAI V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17144196355Zinc finger protein JACKDAW
5b3h_F2e-17144196355Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031314
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0871654e-40BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240417.10.0zinc finger protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-145IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A151RFD51e-180A0A151RFD5_CAJCA; Zinc finger protein MAGPIE
STRINGLus100313140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-108C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]