PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031078

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

BBR-BPC

Protein Properties

Length: 301aa MW: 33633.9 Da PI: 9.333

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031078	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	304.3	4.4e-93	34	300	16	301
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq 113 +a++l ++++m +iaerda+i+ernlalsek++a+a+rd+a +qr kal er+kal+erdn+++a+ ++en++++++ + g+k i + Lus10031078 34 QANALM--KNKKIMGIIAERDAAIQERNLALSEKREALAARDEAIQQRQKALIERDKALMERDNAYAAIRYRENEMSFSS----SQHGGSKRIPHPVY 125 334444..589*************************************************************976555....44556667765544 PP GAGA_bind 114 lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvP 211 l+++ ++ +e ++++++++ e++ + +a+kp++k +k +++ +++ + v+ s+ ++ ++e++ +d+ ln +s+Des +P+P Lus10031078 126 -----LRNDLEDDEEVAANKQPKLSK------ENN--AVSLKATKPRKKGSKTVEDGPPNRQAIVAVVSEGTKFRSEWDALDMELNLISYDESMMPPP 210 .....333333322333333333333......333..333556677777777778877777777888887799********************* PP GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 vCsCtG+++qCYkWG+GGWqS+CCtttiS +PLP+ +++r++R++grKmS+g+f klL++Laa G+dls p+DLkd+WA+HGtn+++ti+ Lus10031078 211 VCSCTGTPHQCYKWGSGGWQSSCCTTTISCHPLPQLPNKRHSRVGGRKMSSGVFAKLLSRLAAAGHDLSVPLDLKDYWARHGTNRYITIK 300 ***************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.4E-126	1	300	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-89	14	300	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MNDGSQHQNG SYNEQHNTTH SPWNMVPQHQ GKEQANALMK NKKIMGIIAE RDAAIQERNL 60 ALSEKREALA ARDEAIQQRQ KALIERDKAL MERDNAYAAI RYRENEMSFS SSQHGGSKRI 120 PHPVYLRNDL EDDEEVAANK QPKLSKENNA VSLKATKPRK KGSKTVEDGP PNRQAIVAVV 180 SEGTKFRSEW DALDMELNLI SYDESMMPPP VCSCTGTPHQ CYKWGSGGWQ SSCCTTTISC 240 HPLPQLPNKR HSRVGGRKMS SGVFAKLLSR LAAAGHDLSV PLDLKDYWAR HGTNRYITIK 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031078

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006379265.1	1e-136	protein BASIC PENTACYSTEINE4
Swissprot	Q8S8C6	1e-110	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	H1ZN44	1e-135	H1ZN44_POPTR; BBR-BPC family protein
STRING	Lus10031078	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6974	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-112	basic pentacysteine 4

Link Out ? help Back to Top
Phytozome	Lus10031078