PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 433aa MW: 47895.9 Da PI: 9.3008 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.6e-32 | 236 | 289 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Lus10030989 236 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 289 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-15 | 233 | 289 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 234 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-23 | 236 | 289 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-7 | 237 | 288 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MELFPAQPDL SLQISLPNTK PTSSTWRRTS DEDADDSPLG GFWKRALDSR STNTTTAVTT 60 TTTTTTTGGS SSFDLSLSNP SSSAAAINNP HYYPPNHHHF NNGSSSNVTN FFRSGGPNFQ 120 QHLHPHHQQY YHQHHQYPAT AVEEMGYLRP IKGIPLYQNP PPPSNSFSPN IHHHQQLHPS 180 MDTINALASG GGGRGFMGQQ QHQHQPSSTS SSSLMMMRSS TRFMSRFPGK RSMRAPRMRW 240 TTTLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDRAAATS 300 GQSDLVDNGS SGDNSEDLML DIHNTSSSSS RRPPPEPCSM MQQQQQQQQQ GIRTPSSIGH 360 HHSLWSNSSR EAWLHGKTKD PPATLTSLEQ KEMDPKCMSY ERISDGSCSS SQLSGSRSPQ 420 RPNLEFTLGR PL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-16 | 237 | 291 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 237 | 291 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 237 | 291 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 237 | 291 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 237 | 291 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030989 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ461511 | 1e-64 | GQ461511.1 Linum usitatissimum clone LU0CT0E22 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021667689.1 | 1e-122 | probable transcription factor KAN2 isoform X4 | ||||
Refseq | XP_021681931.1 | 1e-122 | probable transcription factor KAN2 isoform X4 | ||||
Refseq | XP_027360426.1 | 1e-122 | probable transcription factor KAN2 isoform X1 | ||||
TrEMBL | A0A371F7I0 | 1e-122 | A0A371F7I0_MUCPR; Putative transcription factor KAN2 (Fragment) | ||||
STRING | Lus10030989 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5968 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 4e-62 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030989 |