PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030989
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 433aa    MW: 47895.9 Da    PI: 9.3008
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030989genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.6e-32236289255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Lus10030989 236 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 289
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-15233289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-28234289IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23236289IPR006447Myb domain, plants
PfamPF002493.0E-7237288IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MELFPAQPDL SLQISLPNTK PTSSTWRRTS DEDADDSPLG GFWKRALDSR STNTTTAVTT  60
TTTTTTTGGS SSFDLSLSNP SSSAAAINNP HYYPPNHHHF NNGSSSNVTN FFRSGGPNFQ  120
QHLHPHHQQY YHQHHQYPAT AVEEMGYLRP IKGIPLYQNP PPPSNSFSPN IHHHQQLHPS  180
MDTINALASG GGGRGFMGQQ QHQHQPSSTS SSSLMMMRSS TRFMSRFPGK RSMRAPRMRW  240
TTTLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDRAAATS  300
GQSDLVDNGS SGDNSEDLML DIHNTSSSSS RRPPPEPCSM MQQQQQQQQQ GIRTPSSIGH  360
HHSLWSNSSR EAWLHGKTKD PPATLTSLEQ KEMDPKCMSY ERISDGSCSS SQLSGSRSPQ  420
RPNLEFTLGR PL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-16237291357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16237291357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16237291357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16237291357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16237291458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030989
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4615111e-64GQ461511.1 Linum usitatissimum clone LU0CT0E22 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021667689.11e-122probable transcription factor KAN2 isoform X4
RefseqXP_021681931.11e-122probable transcription factor KAN2 isoform X4
RefseqXP_027360426.11e-122probable transcription factor KAN2 isoform X1
TrEMBLA0A371F7I01e-122A0A371F7I0_MUCPR; Putative transcription factor KAN2 (Fragment)
STRINGLus100309890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-62G2-like family protein