PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030938
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 583aa    MW: 64462.5 Da    PI: 5.5294
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030938genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.21.8e-23305355152
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                  k++++Wt++LH++Fv+aveqL G ++A+P++ilelmkv+gLt+++++SHLQ 
  Lus10030938 305 KTKVDWTSDLHRNFVKAVEQL-GVDQAIPSKILELMKVEGLTRHNIASHLQY 355
                  6799*****************.*****************************5 PP
2Response_reg32.54.3e-12201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  +++ le  +y  v ++ + eeal  + +k   ++  ++ +     dG + +k +++++ +lpii+++  +  +++ +++ +Ga+
   Lus10030938  20 VLLLDEDSNSAAEIKSKLEAMDY-TVSTFCKEEEALSAFSDKPesFHAAVVEVTV--GDGNRSFKFLENAK-DLPIIMISNVNCLSTMMKCMALGAM 112
                   7899999999999**********.***************7777568888887655..6999******9988.9************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
   Lus10030938 113 EFLLKPLSEDKLRN 126
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-1617151No hitNo description
SMARTSM004480.007818128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.64619132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.52E-921131No hitNo description
PROSITE profilePS5129413.136302361IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-22303356IPR009057Homeodomain-like
SuperFamilySSF466895.91E-15303359IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-23305358IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MVCTANDLSE WKDFPKGLSV LLLDEDSNSA AEIKSKLEAM DYTVSTFCKE EEALSAFSDK  60
PESFHAAVVE VTVGDGNRSF KFLENAKDLP IIMISNVNCL STMMKCMALG AMEFLLKPLS  120
EDKLRNLWQH VVHKAFNAGS SVQSEPMKPV KDSVVSMSEI KKEIEVMDNG NSDETEEVSP  180
ADDTIGQSSD SDKYPAPSTP QLKQGQRLLD DVDCQDHTHC STEKESAEQE GESKSVETSF  240
TMAEISVQVD TGNLTDSKIK EDDDLTSGSN IDLQNSQNNS NGGAEDGSKA SCLNTSGVTK  300
ANRKKTKVDW TSDLHRNFVK AVEQLGVDQA IPSKILELMK VEGLTRHNIA SHLQYHFASQ  360
GLIVLQYQVN ISLMELSLKQ KYRMHRRHIL PKEDERRWPQ QHKDGTKRSY YLQKPIIAYP  420
PPYHQQQHST HATFPPNYVH PMWGAATGNH PPPGVQMWSP PGYSPWPSFP TLHADAWGCP  480
VMPQPQLPYP CLPQNQPGYH GVALAGYHGV ALADNHCTMS QNPFNFQPAE EVIDKVVKEA  540
INEPWLPLPI GLKPPSIDSV VAELCRQGIS AVPPHIHGSN SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368445.20.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440369.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440375.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440380.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440382.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLA0A2K2BXM60.0A0A2K2BXM6_POPTR; ARR-B family protein
STRINGLus100309380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-124ARR-B family protein