PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 1279aa MW: 141066 Da PI: 7.0668 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.7e-09 | 367 | 415 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Lus10030908 367 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 415 58*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.8E-17 | 362 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.85E-10 | 362 | 419 | No hit | No description |
PROSITE profile | PS50888 | 15.51 | 364 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-17 | 365 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-6 | 367 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-10 | 370 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51375 | 7.574 | 574 | 604 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 2.6E-8 | 578 | 666 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF01535 | 0.008 | 579 | 603 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.802 | 605 | 635 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0018 | 607 | 637 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 1.3E-4 | 607 | 632 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.95 | 636 | 670 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 9.2E-7 | 638 | 667 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 4.8E-8 | 638 | 683 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.026 | 672 | 706 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 2.6E-8 | 704 | 765 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 7.333 | 707 | 737 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.334 | 738 | 772 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 5.6E-8 | 738 | 768 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 7.3E-8 | 740 | 769 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 1.5E-8 | 769 | 815 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.9E-6 | 771 | 804 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.862 | 773 | 803 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.226 | 804 | 838 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.046 | 839 | 869 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0011 | 844 | 871 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.704 | 870 | 904 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 2.0E-11 | 870 | 917 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 5.7E-7 | 872 | 904 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.149 | 905 | 939 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.188 | 940 | 970 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.8E-4 | 945 | 971 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 1.0E-4 | 945 | 968 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 13.373 | 971 | 1005 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 2.6E-9 | 971 | 1018 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 8.5E-8 | 973 | 1007 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.826 | 1006 | 1041 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 7.728 | 1042 | 1072 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 3.1E-4 | 1045 | 1069 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.2E-4 | 1046 | 1069 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 2.6E-8 | 1102 | 1128 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 8.44 | 1108 | 1142 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF14432 | 7.8E-41 | 1144 | 1268 | IPR032867 | DYW domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1279 aa Download sequence Send to blast |
MEMEISEKDK LELEKRDNVD NPMNYQSSGG GLSSDWRFGG GANVANSALG GAASCSSAAM 60 GEESFGGPAG IWDHQASSQN IGFCDLINAP GTPLGMVKGG GALGMGWNPH SSMSRESGIF 120 LPNPHGILPP SLSPFPADPA FIERASRFSC FSGGGQFSDM AHPFAMSEAM GLYSRGGGMI 180 PVPPQEVFAG IGSKSLSGQR NMMMNPGECS TEVTDASLRM DHHAKTEESP LKSERRSESV 240 VRSQDEVKPG VVRSGNDSDE AEFSGGGGQD DATMLEGNGG KLSLKGLDSR KRKRNGQDTE 300 HDAGKGSQQS GESTKDGSEI HQKGGKNPSP AANKASGKNG KQGGSQVSDP AKEEYIHIRA 360 RRGQATNSHS LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF 420 LSMKLATVNP RMDFNSLEGL LTKDILSSRA IPSANLPFSP EMPMPYPPLH PSQSGLIPTG 480 FPAMANHSDI LRRTIGSQLA SSSGEFKDPA QQLPSSWNEE LHNVIQMYGA AGPQDSQEIA 540 GTKLFLQLVY CETRNQSQVK KLHCHILRTL LNPEPFLSNN LINAYGQLRN PSYARNVFDE 600 MPQRTPFSWN TLLSAYSKSG DLSQMQEIFN LMPITDGVSW NSLISGYANH GSVDEAVKAY 660 GMMLRNGAGN VNRITFSTML ILCSSRERIE LGRAIHGQIV RLGFRDYVFV GSALVDMYCK 720 IGSVHEAVRS FDEIRERNVV MYNTLITGLL RNGMVEDAKR IFRSMKDRDS ITWTTMITGF 780 VQNGLDRDAL DLFREMRVAE MEIDQFTFGS VLTACGGIKA LHEGKQVHAF IVRKEFKGNV 840 FVDSALLDMY CKSKNVSYAE AVFRRMKVRN VVSWTAMLVG YGQNGFSEQA IRIYSEMQRN 900 GIKPEDFTLG SVISSCANLA SLEEGTQFHA RALMSGLISS ITVSNALITL YGKCGSVEEC 960 DRLFHEMKFR DEVSWTAMVS GYAQFGKAEK TIELFEEMLR QGLKPDSVAF IGVLSACSRA 1020 GLVERGNWYF ESMSRDHGIN PSCDHYTCMI DLLSRAGRLE EAKDFIHKMP FCPDAIGWAT 1080 LLSSCRFHSN LEIGKWAAES LLEVDPNNPA AYILLTSIYA SRGEWNDVAQ LRRGMREKGL 1140 RKDPGCSWIK FKNKVYIFSA DDFSSPFYDQ INAKLENLYE KMVQMGYVPD ASSVLHDVEE 1200 SEKIKMLGHH SEKLAIAFGL LFIPHGCPIR VIKNLRVCKD CHTVTKYISK ITQREILVRD 1260 SARFHLFKDG ACSCGDFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5iww_D | 1e-68 | 609 | 1082 | 6 | 337 | PLS9-PPR |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030908 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314911.1 | 0.0 | putative pentatricopeptide repeat-containing protein At1g68930 | ||||
Refseq | XP_024465895.1 | 0.0 | putative pentatricopeptide repeat-containing protein At1g68930 | ||||
Refseq | XP_024465896.1 | 0.0 | putative pentatricopeptide repeat-containing protein At1g68930 | ||||
Refseq | XP_024465897.1 | 0.0 | putative pentatricopeptide repeat-containing protein At1g68930 | ||||
Refseq | XP_024465898.1 | 0.0 | putative pentatricopeptide repeat-containing protein At1g68930 | ||||
Refseq | XP_024465899.1 | 0.0 | putative pentatricopeptide repeat-containing protein At1g68930 | ||||
Swissprot | Q9CAA8 | 0.0 | PP108_ARATH; Putative pentatricopeptide repeat-containing protein At1g68930 | ||||
TrEMBL | A0A1Q3ATJ3 | 0.0 | A0A1Q3ATJ3_CEPFO; HLH domain-containing protein/PPR domain-containing protein/PPR_2 domain-containing protein/DYW_deaminase domain-containing protein (Fragment) | ||||
STRING | Lus10030908 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 4e-90 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030908 |
Publications ? help Back to Top | |||
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