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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 98aa MW: 10262.9 Da PI: 4.4831 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 88.7 | 1.5e-27 | 18 | 84 | 5 | 67 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldesl 67 + +q+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn+ kas +ll+a+ +++ + Lus10030893 18 AAEDQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMIKASflpfHLLPASPDVGLDN 84 5789******************************************999888888899988765544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-24 | 19 | 71 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MSSTVSSQLF DLPAAAAAAE DQICYVQCGF CTTILLVSVP CSSLSMVVTV RCGHCTSLLS 60 VNMIKASFLP FHLLPASPDV GLDNDEVHNQ VEGLKFA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030893 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016200725.1 | 1e-31 | axial regulator YABBY 4 | ||||
Refseq | XP_025650841.1 | 1e-31 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 2e-26 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A1R3I6W4 | 2e-31 | A0A1R3I6W4_COCAP; YABBY protein | ||||
STRING | Lus10030893 | 1e-64 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-28 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030893 |
Publications ? help Back to Top | |||
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