PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030880
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 419aa    MW: 46465.7 Da    PI: 8.309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030880genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12253296755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + Er+RR++i ++++ Lr l+P+ +      K++Ka+i   Av+YI +Lq
  Lus10030880 253 ILERNRRNKIQQRLFALRALVPNiS------KMDKASIIGDAVDYIIELQ 296
                  78*********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-1312157IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.97E-16241311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-12244300No hitNo description
PROSITE profilePS5088815.193246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-12252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-16253313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-10253296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAGGLDSVVA LLRPIVDCRA WDYCVVWKLT PVSSRFLEWI GCCCSGAMDS GGFLADKVVK  60
QEAGAGANGP FCRDLNFMHP IGSMACLALA RFPSSLPLYP GIHGAVAISN ESTWIHSDAQ  120
TYAGSGETRV LIPVIGGLIE LFAAKHVDQD DMIVDLILTH CNTLLYGMIM KEQSLDPSNS  180
NEFEDLCSPS YKSSISIPSN VYPLLDRTYS ALSASAAASS SKPPKLTDNF MNRKVAKSNE  240
KPARKRPSSK NLILERNRRN KIQQRLFALR ALVPNISKMD KASIIGDAVD YIIELQNERK  300
RLEKELDQLE EQEESRKFDS ERTKKVSSNL PTAVVKTEMI EADLDVINIG RREYLIRLLY  360
NQRKGGLVML METLSSLGLQ VVDANITKIH GSVLHILRVQ GNEVITQWKL RERLVKLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-132553191377Transcription factor MYC2
5gnj_B3e-132553191377Transcription factor MYC2
5gnj_E3e-132553191377Transcription factor MYC2
5gnj_F3e-132553191377Transcription factor MYC2
5gnj_G3e-132553191377Transcription factor MYC2
5gnj_I3e-132553191377Transcription factor MYC2
5gnj_M3e-132553191377Transcription factor MYC2
5gnj_N3e-132553191377Transcription factor MYC2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100308800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-61bHLH family protein