PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB

Protein Properties

Length: 310aa MW: 33658.4 Da PI: 9.4827

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030677	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv +++ +G+ +W++I+ g++R+ k+c++rw +yl Lus10030677 14 KGPWTPEEDILLVSYIHHHGPSNWRSIPTNTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.4	2.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++Ed+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Lus10030677 67 RGNFTPQEDQMIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.095	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.75E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.99E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.934	62	116	IPR017930	Myb domain
SMART	SM00717	9.1E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-26	69	116	IPR009057	Homeodomain-like
CDD	cd00167	4.37E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGRAPCCDAG GVKKGPWTPE EDILLVSYIH HHGPSNWRSI PTNTGLRRCS KSCRLRWTNY 60 LRPGIKRGNF TPQEDQMIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLLNNS 120 PHRVNNGVSD HHQRNSSPAS RTASPSSSAS SSSGSPSRGQ WERRLQTDIH TARQALSEAI 180 SPSLSSAPDL NSSHAPPTAA AAYASSAENI AKLLKGWMKK SKTDDSAAGG ESSQVSGYST 240 VGLAGQSMDL GSGEMNSDSR HTSPYGGYSR KAEEARLSLL EKWLLDEGTA STAGKYEFLS 300 TLMDGDNFM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-25	14	116	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269\|PubMed:25305760, ECO:0000269\|PubMed:27577115}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030677

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269\|PubMed:25305760}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015879369.1	1e-104	myb-related protein 306
Swissprot	Q9SN78	1e-97	MYB94_ARATH; Transcription factor MYB94
TrEMBL	A0A2N9FVI2	1e-102	A0A2N9FVI2_FAGSY; Uncharacterized protein
STRING	Lus10030677	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1016	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	5e-93	myb domain protein 30

Link Out ? help Back to Top
Phytozome	Lus10030677

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Lee SB,Kim HU,Suh MC MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis. Plant Cell Physiol., 2016. 57(11): p. 2300-2311 [PMID:27577115]