PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030609
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 419aa    MW: 46416.5 Da    PI: 6.9214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030609genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12253296755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + Er+RR++i ++++ Lr l+Pk +      K++Ka+i   Av+YI +Lq
  Lus10030609 253 ILERNRRNKIQQRLFALRALVPKiS------KMDKASIIGDAVDYIIELQ 296
                  68*********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-1412157IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.32E-16240311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-11244300No hitNo description
PROSITE profilePS5088814.443246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-10253296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15253313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAGGLESVVA LLRPIVDCRA WDYCVVWKLT PVPSRFLEWI GCCCSGAMDG GSFLTDTIVK  60
QEAGAEAIGP FCRDLNSKHP IGSMACHALA CFPSFLPLYP GIHGAVAISN ESIWMHSDAQ  120
TYTESGETRV LIPVIGGLIE LFAAKHVDQD DMIVDLILTH CNTLLYGMIM KEQSLDPSNS  180
NEFEELWPPS YSSSISIPSN VYPLLDRSYS ALSASAAASS SKPPKLTDNS VNTKVAKSNG  240
KPARKRPTYK NLILERNRRN KIQQRLFALR ALVPKISKMD KASIIGDAVD YIIELQNERK  300
RLEEELDQLE EEEEIRKVDS ERTKNISSNL PTAVVKTEMI EADLDVITIG HREYLIRLLY  360
NQRKGGLVKL IETLSSLGLQ VVDANITNLR GSVLHILRVQ GNEAIAQWKL RGRLVKLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030609
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100306090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-66bHLH family protein