PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030581
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 1280aa    MW: 141214 Da    PI: 7.1301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030581genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09367415355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10030581 367 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 415
                  58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17362434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.86E-10362419No hitNo description
PROSITE profilePS5088815.51364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17365433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS513755.349540574IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.574575605IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.0E-7580671IPR011990Tetratricopeptide-like helical domain
PfamPF015350.008580604IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.561606636IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0019608633IPR002885Pentatricopeptide repeat
PfamPF015351.4E-4608633IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.348637667IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-6639667IPR002885Pentatricopeptide repeat
PfamPF015355.5E-7639667IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.963673707IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.224708738IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.0E-7709766IPR011990Tetratricopeptide-like helical domain
PfamPF130413.3E-8738769IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.17739773IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.0E-8741770IPR002885Pentatricopeptide repeat
PfamPF130417.5E-9770817IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.9E-6772805IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.862774804IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.632805839IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.815840870IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.704871905IPR002885Pentatricopeptide repeat
PfamPF130411.7E-11871918IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-7873905IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.875906940IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.188941971IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-4946972IPR002885Pentatricopeptide repeat
PfamPF015351.0E-4946969IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.0669721006IPR002885Pentatricopeptide repeat
PfamPF130414.7E-119721019IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-79741008IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.82410071042IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.7E-410091043IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.78310431073IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-410461070IPR002885Pentatricopeptide repeat
PfamPF015350.001810461070IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.0E-711031122IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.37711091143IPR002885Pentatricopeptide repeat
PfamPF144321.2E-3911451269IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1280 aa     Download sequence    Send to blast
MEMEISEKDK LELEKRDDVD NPMNYQSSGG GLSSDWRFGG GANVANSTLG GAASCSSAAM  60
GEESFGGPAG IWDHQASSQN IGFCDLINAP GTPLGMVKGG GALGMGWNPH SSMSRGSGIF  120
LPNPHGILPP SLSPFPADPA FIERASRFSC FSSGGQFSDM AHPFAMSEAM GLYSRGGGMI  180
PVPPQEVFAG SGSKSLSGQR NMMMNPGECS TEVTDASLRM DHHAKTEESP LKSERRSESV  240
VRSQDEVKPG VVRSGNDSDE AEFSGGGGQD DATMLEGNGG KMSCKVLDSR KRKRNGQDTE  300
HDAGKGSQQS GESTKDGSEI HQKGGKNPSP AANKASGKNG KQGGSQVSDP AKEEYIHIRA  360
RRGQATNSHS LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RMDFNSLEGL LSKDATSRAI PSASLPFSPE MPMPYPPLHP SQSGLIPPGF  480
PAMGNHSDIL RRTIGSQLAS SSGEFKDPAQ LPSSWNEELH NVIQMYGTAG PQDSQEITAI  540
SNRYSSFLKL YCETRNQTQV KKLHCHILRT LLNPEPFLSN NLINAYGQLR NPSYARNVFD  600
EMPQRTPFSW NTLLSAYSKS GDISQMQEVF NLMPIIDGVS WNSLISGYAN HGSVDEAVKA  660
YGMMLRNDAG NVNRITFSTL LILCSSRELV VSGRAIHGQI VRLGFRDCVF VGSALVDMYC  720
KIGSVNEAVQ AFYEIREKNV VMYNTLITGL LRHGMVEDAR RIFHSMKDRD SITWTTMITG  780
FVQNGLDRDA LDLFREMRVA EMEIDQFTFG SVLTACAGVK ALDDGKQVHA FIIRKDYKGN  840
VFVDSALLDM YCKCHNVSYA EAVFRRMKVR NVVSWTAMLV GYGQNGFSEQ AIRIYSEMQR  900
NGIKPEDFTI GSVISSCANI ASLEEGTQFH AQALMSGLIS SITVSNALIT LYGKCGSVEE  960
CDRLFHEMKF RDEVSWTAMV SGYAQFGKGE KTIDLFEEML RKGLKPDSVT FIGVLSACSR  1020
AGLVERGKQY FESMSRDHGI NPTRDSYTCM IDLLSRAGRL EEAKNFIHNM PFCPDAIGWA  1080
TLLSSCRFHS NLEIGKWAAE SLLEVDPNNP AGYILLTSIY ASRGEWNNVA HLRRGMREKG  1140
LRKDPGCSWI KFKNKVYIFS ADDFSSPFYY QINAELERLY EKMMQMGYVP DSSSVLHDVE  1200
ESEKIKMLGH HSEKLAIAFG LIFIPRVCPI RVIKNLRVCK DCHTVTKYIS KITQREILVR  1260
DSVRFHLFKD GACSCGDFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-7154410836337PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030581
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314911.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465895.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465896.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465897.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465898.10.0putative pentatricopeptide repeat-containing protein At1g68930
RefseqXP_024465899.10.0putative pentatricopeptide repeat-containing protein At1g68930
SwissprotQ9CAA80.0PP108_ARATH; Putative pentatricopeptide repeat-containing protein At1g68930
TrEMBLA0A1Q3ATJ30.0A0A1Q3ATJ3_CEPFO; HLH domain-containing protein/PPR domain-containing protein/PPR_2 domain-containing protein/DYW_deaminase domain-containing protein (Fragment)
STRINGLus100305810.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.39e-90bHLH family protein
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]