PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030531

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 451aa MW: 49974.7 Da PI: 6.2616

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030531	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.9	1.1e-08	237	284	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r + NR +A rs +RK +i eLe+ v++L+ae +L +l Lus10030531 237 KRAKRIIANRQSAARSKERKARYILELERNVQNLQAEAATLGAQLTLF 284 9*************************************9998877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.630.10	5.3E-17	2	68	IPR001128	Cytochrome P450
SuperFamily	SSF48264	9.95E-17	2	67	IPR001128	Cytochrome P450
Pfam	PF00067	2.4E-10	2	60	IPR001128	Cytochrome P450
PROSITE pattern	PS00086	0	8	17	IPR017972	Cytochrome P450, conserved site
SMART	SM00338	9.5E-15	233	297	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.887	235	298	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-6	237	281	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.58E-9	237	292	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-7	237	299	No hit	No description
CDD	cd14703	5.71E-23	238	287	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005506	Molecular Function	iron ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	Molecular Function	heme binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MHFELIPFGA GRRICPGIAF GMANVELPVA QLLYHFDWEL PDGVEDLDMT EDFAATMGRK 60 NPLWLVPRVH RFSNVREKDV EEKHMISTDD PIPNPNTTAE SPSANGGNSQ TPRGSFHRRA 120 FSEFQFRIPD DLDLDPLDPP SVTSFDELGS EDDLFYTYMD MGGGSLGSKP DDIDQKIDEA 180 AENPSSSGGG GGGGNKGVKG KHRHSNSVDG SSFVQSIEAK KAMGPDKLAE LWNMDPKRAK 240 RIIANRQSAA RSKERKARYI LELERNVQNL QAEAATLGAQ LTLFQRDTLG LTNENADLKL 300 RVQAMEQQAQ LREAVNDALR KEVEMLKIAT GERTAQQQLE YPYNMGMHHQ HHHLSYNHPP 360 FFPLHQQQPG NVMYNPHSIQ VPQFHPNNNL QSSRHLPTVT AALPNHHGRG FPEMLPHERL 420 QGLDISGGGG RSYVVVKSEG PSISASESNN *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MHFELIPFGA GRRICPGIAF GMANVELPVA QLLYHFDWEL PDGVEDLDMT EDFAATMGRK  60
NPLWLVPRVH RFSNVREKDV EEKHMISTDD PIPNPNTTAE SPSANGGNSQ TPRGSFHRRA  120
FSEFQFRIPD DLDLDPLDPP SVTSFDELGS EDDLFYTYMD MGGGSLGSKP DDIDQKIDEA  180
AENPSSSGGG GGGGNKGVKG KHRHSNSVDG SSFVQSIEAK KAMGPDKLAE LWNMDPKRAK  240
RIIANRQSAA RSKERKARYI LELERNVQNL QAEAATLGAQ LTLFQRDTLG LTNENADLKL  300
RVQAMEQQAQ LREAVNDALR KEVEMLKIAT GERTAQQQLE YPYNMGMHHQ HHHLSYNHPP  360
FFPLHQQQPG NVMYNPHSIQ VPQFHPNNNL QSSRHLPTVT AALPNHHGRG FPEMLPHERL  420
QGLDISGGGG RSYVVVKSEG PSISASESNN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030531

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021638413.1	1e-113	transcription factor RF2b-like
Swissprot	O22873	2e-92	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2P2JWC3	1e-112	A0A2P2JWC3_RHIMU; Uncharacterized protein
STRING	Lus10030531	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-83	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10030531

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]