PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030430
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 365aa    MW: 39626.8 Da    PI: 4.6503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030430genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-183988255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ G+r+++ +grWvAeI+d +    ++ r++lg++ taeeAa+a+++a+  l+g
  Lus10030430 39 RFVGIRQRP-SGRWVAEIKDtV----QKIRVWLGTYNTAEEAARAYDEAACLLRG 88
                 789******.7*********55....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.59E-303895No hitNo description
PfamPF008471.3E-123988IPR001471AP2/ERF domain
PROSITE profilePS5103219.1243996IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-183995IPR016177DNA-binding domain
SMARTSM003801.1E-3239102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-263995IPR001471AP2/ERF domain
PRINTSPR003673.1E-74051IPR001471AP2/ERF domain
PRINTSPR003673.1E-76278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKRKKPDDPN NTSDDDGSIH KLMMEEVAAL AGAARPQKRF VGIRQRPSGR WVAEIKDTVQ  60
KIRVWLGTYN TAEEAARAYD EAACLLRGAN TRTNFLSGPT QGRPTPTLPP KTANRLLQRL  120
KARSVDLLAS ESLHCAPNDG VAAPNLTTEA VANVSNKDKI NYGSHSSIGN DIVLAANSTY  180
TVANPTDKTT EMETRNNVGC CLTATIDFGQ LVDGPDYSSS SSGGFGSVDL SMTTTTRPGY  240
CSALDIAHEM TMDPFLKQSK EEDDNDRSDH DCEAIEGMSE MSKRLSYERK FSASLYAYNG  300
VAECLSRMVG VNSTNNDDIS SDSYNYDCPQ MSSACSSLSS FNGGEDEELS LWSSLDFPSQ  360
YFSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100304300.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-21related to AP2 11