PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030243 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 600aa MW: 66099.2 Da PI: 6.5726 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.9e-13 | 436 | 482 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Lus10030243 436 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 482 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.1E-52 | 55 | 246 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.047 | 432 | 481 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-18 | 435 | 494 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.05E-15 | 435 | 486 | No hit | No description |
Pfam | PF00010 | 1.8E-10 | 436 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-18 | 436 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-17 | 438 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MKFEASSRCG GEAWNEEDKA IIAAILGNKA FDHLISKTVS NENLLTTAVT DDDNLQNKLS 60 DLVDRSSSSF CWNYAIFWQI SYSKSGDWVL GWGDGSCREP HGSEPVLGRR VEDDPTKQRM 120 RKRVIHKLQQ LFGGSEDGED DVVDEDYALG LDRVTDTEMF FLASMYFSFP KGEERGPGKA 180 FESGNHVWIS NALNSKSDYC VRSFLARSAG IQTVVLIPTD VGVLELGSVR SVPESVELVQ 240 SMAAHFSSRL RLKPLAIPVQ AAPAVVPMPV VSERKKDEIN SGFGNLGFVE RIEAIPHKIF 300 GQDFNRANNN NNNNNHHHHG YREKLAVVKM EERPSVSNPN PAANWGAKAA ANNIQEFVNG 360 VREEFRISHY PSQQKQQGQL QIDFSSAGSM VVARPIPSVE SECTSDGEGA TPLTKDDKRP 420 RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAIAYINE 480 LQAKLKMMEA ERGVGTGTCS GSGTGLVDVD VQASSSNDEV MVRVSCPFDS HPASRVIQAF 540 KEAKITVMDS KLAAANETVY HTFVVKAQQG SEQLTKERLM AVFSHESSNS ALQPLSTVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 1e-29 | 430 | 492 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 417 | 425 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030243 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024440877.1 | 0.0 | transcription factor bHLH13 | ||||
Refseq | XP_024440878.1 | 0.0 | transcription factor bHLH13 | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A2K1XT84 | 0.0 | A0A2K1XT84_POPTR; Uncharacterized protein | ||||
STRING | Lus10030243 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5448 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-154 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030243 |
Publications ? help Back to Top | |||
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