PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030137
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 316aa    MW: 33803.1 Da    PI: 9.8661
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030137genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.71.4e-31144199258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg gGrF
  Lus10030137 144 EPVYVNAKQYQGILRRRQARAKAEVEKKL-IKVRKPYLHESRHRHAMRRARGAGGRF 199
                  8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.9E-34141202IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.334142202IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27144199IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-24145167IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860147167IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-24176199IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQPKPVTVPP DGQVLPPYGT PSEPWWRSVG YHSVAPAAAA GGNASKSTDG SESNDDQSQS  60
NARTNGEDDD AGKESQTTAS SVRSQGQEKP NLENVTPGVT AVQDESLAQA PRFELVGHSV  120
RSNSPHLVGV PQTRIPLPLE MAPEPVYVNA KQYQGILRRR QARAKAEVEK KLIKVRKPYL  180
HESRHRHAMR RARGAGGRFA KKTEMEASGS KAELRMSGSG PTPSSQSGAS SGSEQLLSDS  240
TGTWNSSSGQ HETRVHRGRH VFEAQQYRSG DGRSGGSQTM AYHSHPGEKG EEGDCSIQHR  300
GSISSQASVR PVAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19144199358NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183192RHRHAMRRAR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030137
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638286.11e-101nuclear transcription factor Y subunit A-1-like isoform X2
SwissprotQ9LXV54e-50NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLB9RID05e-95B9RID0_RICCO; Nuclear transcription factor Y subunit A-1, putative
STRINGLus100301370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.39e-35nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]