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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 319aa MW: 34860.7 Da PI: 8.6328 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 152.9 | 3e-47 | 12 | 172 | 6 | 159 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenl....ksnvekeesastsvsse 99 + eq+Cy+ CnfCn +lavsvP++ ++ vvtvrCGhCt+l svn+a a + +s ++l+ +++ ++ l s + + + + ++++ Lus10030105 12 AHEQLCYIPCNFCNIVLAVSVPYSNVMDVVTVRCGHCTNLWSVNMAAAFPYSSLSSPPPPPPLPHLQYHQGGGNHGLfpaaGSSASPSPPPAAATATN 109 679******************************************99884444443333444555444444333332000022222222222222222 PP YABBY 100 kl.senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 k s ++++p p +rPPekrqrvPsayn+fikeeiqrika+ Pdishreafs+aakn Lus10030105 110 KRsSAPPSRSLPYNDPrvPNRPPEKRQRVPSAYNQFIKEEIQRIKANKPDISHREAFSTAAKN 172 22233344444433333247******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.1E-52 | 12 | 172 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.54E-5 | 125 | 170 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MSSSSCVGEM VAHEQLCYIP CNFCNIVLAV SVPYSNVMDV VTVRCGHCTN LWSVNMAAAF 60 PYSSLSSPPP PPPLPHLQYH QGGGNHGLFP AAGSSASPSP PPAAATATNK RSSAPPSRSL 120 PYNDPRVPNR PPEKRQRVPS AYNQFIKEEI QRIKANKPDI SHREAFSTAA KNSRLVSLDL 180 WKLTRGMQSC TEIRLFSVIS TPCISPHDGI LSHMPPPTIR HWRIICDGSF KHNLQKGAIS 240 VRATISIAVT SLMTAADSTP STNATLEAHT KVFETREKDV LTWQTNNAKL ETEYELAKLS 300 QGDLDIHSYY LVASQLWT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030105 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023538154.1 | 2e-56 | axial regulator YABBY 5-like isoform X2 | ||||
Swissprot | Q8GW46 | 3e-52 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A2Z6NZZ8 | 1e-54 | A0A2Z6NZZ8_TRISU; Uncharacterized protein | ||||
STRING | Lus10030105 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-50 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10030105 |
Publications ? help Back to Top | |||
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