PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TALE

Protein Properties

Length: 387aa MW: 43131.1 Da PI: 6.8363

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.7	9.3e-09	304	338	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+ +gL+++q+ +WF N+R ++ Lus10030003 304 KWPYPSETQKVALAEATGLDQKQINNWFINQRKRH 338 569*****************************885 PP
2	ELK	36.8	8.2e-13	258	279	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr YsgyLg+LkqEF+ Lus10030003 258 ELKVQLLRRYSGYLGNLKQEFL 279 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	0.0013	117	162	IPR005540	KNOX1
Pfam	PF03790	2.6E-10	119	161	IPR005540	KNOX1
SMART	SM01256	9.0E-25	161	212	IPR005541	KNOX2
Pfam	PF03791	2.3E-20	165	211	IPR005541	KNOX2
Pfam	PF03789	3.1E-9	258	279	IPR005539	ELK domain
PROSITE profile	PS51213	10.964	258	278	IPR005539	ELK domain
SMART	SM01188	1.6E-6	258	279	IPR005539	ELK domain
PROSITE profile	PS50071	12.665	278	341	IPR001356	Homeobox domain
SMART	SM00389	2.0E-12	280	345	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-19	280	355	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	283	343	IPR009057	Homeodomain-like
CDD	cd00086	6.03E-12	290	341	No hit	No description
Pfam	PF05920	6.8E-17	298	337	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	316	339	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MESGRTAEVC GGGILMGLSN PHRNGIMMIQ QQQHSSNSTP SSSPSSSHSS MDMVTNNNPL 60 PSPYYFMDSN NFISTSISAS LPPTDPHETQ TLTLPNNTNL LPLPPTTNTS SSTSSGVSMR 120 AKIMSHPHFP RLLSAFSNCQ KEEACGGDAP PAAAAMMSGA RTSSLGEDPA LDQFMEAYCE 180 MLTKYEQELS KPFKEALIFL SRIESQFRAL TTTNSSSSPN YNSAQGSGDM ANGRNGSSEE 240 DIEAMEATYI DPQAEDKELK VQLLRRYSGY LGNLKQEFLK KKKKGKLPKE ARQMLLEWWN 300 RHYKWPYPSE TQKVALAEAT GLDQKQINNW FINQRKRHWK PTEDMQFVVM DAANYPHYYL 360 ENGGNSFPLD FNSSSSHHHN HHHQHL*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MESGRTAEVC GGGILMGLSN PHRNGIMMIQ QQQHSSNSTP SSSPSSSHSS MDMVTNNNPL  60
PSPYYFMDSN NFISTSISAS LPPTDPHETQ TLTLPNNTNL LPLPPTTNTS SSTSSGVSMR  120
AKIMSHPHFP RLLSAFSNCQ KEEACGGDAP PAAAAMMSGA RTSSLGEDPA LDQFMEAYCE  180
MLTKYEQELS KPFKEALIFL SRIESQFRAL TTTNSSSSPN YNSAQGSGDM ANGRNGSSEE  240
DIEAMEATYI DPQAEDKELK VQLLRRYSGY LGNLKQEFLK KKKKGKLPKE ARQMLLEWWN  300
RHYKWPYPSE TQKVALAEAT GLDQKQINNW FINQRKRHWK PTEDMQFVVM DAANYPHYYL  360
ENGGNSFPLD FNSSSSHHHN HHHQHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ885435	1e-141	HQ885435.1 Linum usitatissimum clone Contig1323 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002518420.1	1e-116	homeobox protein SBH1
Swissprot	P46608	1e-109	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	B9RXF1	1e-115	B9RXF1_RICCO; Homeobox protein knotted-1, putative
STRING	Lus10030003	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	2e-94	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Lus10030003

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]