PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029950
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 348aa    MW: 38707.7 Da    PI: 5.1001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029950genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-13150201155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i   A++++k+L+
  Lus10029950 150 QRMTHIAVERNRRKQMNEYLSVLRSLMPGS---YAQRGDQASIIGGAINFVKELE 201
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.48E-14148205No hitNo description
Gene3DG3DSA:4.10.280.103.6E-14148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.917149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16149213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-10155206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAIEALDFAF QQQDYSFFTQ FTNKNQSADS FLWTAAEFNN HDGVCGDEDF FHLPAADDYN  60
NVGGNQYNWD NYFLPISSSS TSSPPAGLID GIYTGGSDVT INGDSLSSSS PAPPAETTET  120
NGGGGSPLRP PRVKRRRGRS GKNKEEIESQ RMTHIAVERN RRKQMNEYLS VLRSLMPGSY  180
AQRGDQASII GGAINFVKEL EQKLQQFESY AKRKSTINQN DQSLPFSEFF TFPQYSSSNS  240
QNSTNLETEN HETGPHHGVG DVEVTMVESH ANVRIRWKKQ PKQLLRLVAG LQSLRLTVLH  300
LNVTTDQDQQ IVLYSLSLKV EDDCRLSSVD EIATAVYEML GRISQEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150161RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898498.13e-99transcription factor bHLH94-like
SwissprotQ9C7T45e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2N9ED093e-96A0A2N9ED09_FAGSY; Uncharacterized protein
STRINGLus100299500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]