PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029778
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 678aa    MW: 74008.9 Da    PI: 7.0704
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029778genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.86.2e-2899183187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++q +laL+++r++m+ ++r+++ k+plW++vs+km e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t++yf+qlea
  Lus10029778  99 RWPRQGTLALLKIRTDMDATFRDASVKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKH--EGKTYRYFEQLEA 183
                  8********************************************************************964..4557*******85 PP
2trihelix102.72.8e-32488572186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+k ev aLi +r++++++++++  k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+
  Lus10029778 488 RWPKVEVEALISLRTNLDSKYEENGPKGPLWEDISAGMKRLGYNRSSKRCKEKWENINKYFKKVKESNRKR-PEDSKTCPYFHQLD 572
                  8*********************************************************************8.99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.196158IPR001005SANT/Myb domain
PfamPF138373.4E-1798183No hitNo description
CDDcd122033.41E-2498163No hitNo description
PROSITE profilePS500905.76198156IPR017877Myb-like domain
SMARTSM007170.0062485547IPR001005SANT/Myb domain
PROSITE profilePS500907.178487545IPR017877Myb-like domain
PfamPF138377.2E-22487573No hitNo description
CDDcd122036.89E-28487552No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MLXXXXXSVA SSVNPGGDTA QHHHHNQYQP HHNPNPPPTS SSSSAAAAAA GIVGGFVQEG  60
AGEAGGGGGR GGGAGHVGSS SGGEEDRFGS GDRSFGGNRW PRQGTLALLK IRTDMDATFR  120
DASVKGPLWD DVSRKMGELG YHRSAKKCKE KFENVYKYHK RTKDGRVGKH EGKTYRYFEQ  180
LEAFETHPPG GAPPPPPPQL QMQQVIHPSN PPQTLPATVV TPHNTTVPST TVATAASIIA  240
PPPAAINITT TAVPQLTSFP VYHPPSFSTF SAADLMSNST SSASTSSDVE IHGRHRRKRK  300
WKDFFGRLMT EVVQKQEEMQ RKFLEAIEKR EQERLAREES WRHQEMSRIN REREILAEER  360
SIAAAKDAAV MSFLQKLSDQ QAPGAPPLQL PQSIAQTTPP PPPPITPQPP TTTAPPPASV  420
SAPPPQSQSA PNPVQAAPSP APSMMTPSPA HQHHHILQQS GSQLQMTTGM SRMDSEADRN  480
FLPASSSRWP KVEVEALISL RTNLDSKYEE NGPKGPLWED ISAGMKRLGY NRSSKRCKEK  540
WENINKYFKK VKESNRKRPE DSKTCPYFHQ LDVLYRQKLE GGGGGSTSMT APNSGSGQQQ  600
LPTRPEMNSV PLMVQPEQQW PPQPPPPAAP YNQEHPRGPV TQDMDSEDHD DEEEDYDDED  660
DDEGGGGGYE LVPNKPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029778
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473053.10.0trihelix transcription factor GT-2
TrEMBLA0A067H7R91e-180A0A067H7R9_CITSI; Uncharacterized protein
STRINGLus100297780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-69Trihelix family protein