PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029747
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 571aa    MW: 63062.3 Da    PI: 4.6104
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029747genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.73.8e-1302025703374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ecA+a+s+g+ + a a++++l+++ s +gdp  R+aay++e+Laa++a+s++ lykal+++e +   ss++laa+++++e++P++kf++++aN 
  Lus10029747 202 RLLFECATAISAGNIQGAAAIITELRQMGSIQGDPASRIAAYMVEGLAAKIASSGKYLYKALKCKEPP---SSDRLAAMQILFEICPCFKFGFMAANG 296
                  79*****************************************************************9...9************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  a+ +a++ge++vHiiDfdi+qG Q+++L+q+La++ ++ p +R+Tgv++pes+      l+ +g rL+k+ e+l+vpfef++ va++++ +++++L++
  Lus10029747 297 AMIDAFKGEKKVHIIDFDINQGNQYITLIQTLANQGGKLPYIRLTGVDDPESVqrPIGGLSIIGLRLEKLGEALKVPFEFRA-VASKTALVSPSMLEC 393
                  ***************************************************99878899***********************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +pgEal+Vn+++qlh+++desvs+ +erd++L++vks++Pk+v++veq++++n+++F++rf++a +yysa+++sl+++lpres++ri+vEr++l+r+i
  Lus10029747 394 RPGEALIVNFAFQLHHIPDESVSTVNERDQLLRTVKSMNPKLVTLVEQDVNTNTTPFVQRFVNAYDYYSAVYESLDVTLPRESQDRINVERQCLARDI 491
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vn+vaceg+er+er e ++kWr+r+++aGF+p +++ ++++ ++ ++++++++ ++++ee gsl +gW++r+L+++SaWr
  Lus10029747 492 VNIVACEGEERIERYEVAGKWRARMMMAGFTPRSMGPNVVEMIRKVIKEYGVR-FTLKEEMGSLQFGWEERSLIVASAWR 570
                  ***************************************************99.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.798174551IPR005202Transcription factor GRAS
PfamPF035141.3E-127202570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSLVNPTSAT PYGNHKLYPL KGSTEKSGLS TQMFGPDRNA AIYTTDSCSS ESYEKYFLDS  60
PSEEVIQPSV SGNSGDSSYQ LRTGSGSGSS IAAEVPYHAY VVNSSEPDFL DVAPSPDTEA  120
YDETELNIKL QELERALLDD DGQDDEAYAN NQSMEIESEW SDQMQNPMLY DSPKESSSMD  180
SNLSSIGSCK EVCQLSPRTP KRLLFECATA ISAGNIQGAA AIITELRQMG SIQGDPASRI  240
AAYMVEGLAA KIASSGKYLY KALKCKEPPS SDRLAAMQIL FEICPCFKFG FMAANGAMID  300
AFKGEKKVHI IDFDINQGNQ YITLIQTLAN QGGKLPYIRL TGVDDPESVQ RPIGGLSIIG  360
LRLEKLGEAL KVPFEFRAVA SKTALVSPSM LECRPGEALI VNFAFQLHHI PDESVSTVNE  420
RDQLLRTVKS MNPKLVTLVE QDVNTNTTPF VQRFVNAYDY YSAVYESLDV TLPRESQDRI  480
NVERQCLARD IVNIVACEGE ERIERYEVAG KWRARMMMAG FTPRSMGPNV VEMIRKVIKE  540
YGVRFTLKEE MGSLQFGWEE RSLIVASAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5720656925378Protein SCARECROW
5b3h_A2e-5720656924377Protein SCARECROW
5b3h_D2e-5720656924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029747
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302201.20.0scarecrow-like protein 1
RefseqXP_024450876.10.0scarecrow-like protein 1
RefseqXP_024450877.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K2BEX10.0A0A2K2BEX1_POPTR; Uncharacterized protein
STRINGLus100297470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]