PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029607

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 482aa MW: 52502.9 Da PI: 5.3722

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029607	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	270	324	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt+++vkSHLQkYR+ Lus10029607 270 KARMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYNVKSHLQKYRT 324 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.016	267	327	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-31	269	325	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-17	269	324	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	270	324	IPR006447	Myb domain, plants
Pfam	PF00249	8.6E-10	272	323	IPR001005	SANT/Myb domain
Pfam	PF14379	9.3E-24	355	402	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MKFLPGVCSN LAQNLKCYSG SSTIPVPLLH AAAVGLQKSL TVLSAAFNQG WFLVDPVVMS 60 SSFRVLHTPP EEKYPKLPDT FQTRELMRNP IPQLAVPVGG STSTGAVDYL LSSSAILPHY 120 QGSQLTSQSS NGGGSFPTSL LAPHPEVLQS TTLPVYSEDK SSGSWSINPL AEFLDIPEDV 180 ASEENVKRTD WQWADQWISV DDNLDVDWNE ILSEVNNATE TNQKVPQPSS TNLLPQPSVQ 240 QAQVNPQQEP ALSGELTVAA TPLPSAPANK ARMRWTPELH EAFVEAVNQL GGSERATPKG 300 VLKLMKVEGL TIYNVKSHLQ KYRTARCKPE PSEGSSEKNL GSIDEMKSLD LKTSMGITEA 360 LRLQMEVQKR LHEQLEIQRN LQLRIEEQGR CLQMMFEKQK KMEEEKTELP SSSSPVDDKL 420 GPSDVEGTNS PGNKTSDSGK ASSHEATKKQ KLAGGGNSKD TACVRDDTAS SQSQGKRPRT 480 D*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MKFLPGVCSN LAQNLKCYSG SSTIPVPLLH AAAVGLQKSL TVLSAAFNQG WFLVDPVVMS  60
SSFRVLHTPP EEKYPKLPDT FQTRELMRNP IPQLAVPVGG STSTGAVDYL LSSSAILPHY  120
QGSQLTSQSS NGGGSFPTSL LAPHPEVLQS TTLPVYSEDK SSGSWSINPL AEFLDIPEDV  180
ASEENVKRTD WQWADQWISV DDNLDVDWNE ILSEVNNATE TNQKVPQPSS TNLLPQPSVQ  240
QAQVNPQQEP ALSGELTVAA TPLPSAPANK ARMRWTPELH EAFVEAVNQL GGSERATPKG  300
VLKLMKVEGL TIYNVKSHLQ KYRTARCKPE PSEGSSEKNL GSIDEMKSLD LKTSMGITEA  360
LRLQMEVQKR LHEQLEIQRN LQLRIEEQGR CLQMMFEKQK KMEEEKTELP SSSSPVDDKL  420
GPSDVEGTNS PGNKTSDSGK ASSHEATKKQ KLAGGGNSKD TACVRDDTAS SQSQGKRPRT  480
D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-30	270	326	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029607

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521993.1	1e-130	protein PHR1-LIKE 1 isoform X1
Swissprot	Q8GUN5	2e-88	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	B9S7M4	1e-129	B9S7M4_RICCO; DNA binding protein, putative
STRING	Lus10029607	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	1e-82	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10029607

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]