PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029331
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 229aa    MW: 25094.3 Da    PI: 4.6039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029331genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-20133183356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +kGVr+++ +g+++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Lus10029331 133 FKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYETPEDAALAYDRAAFEMRGA 183
                  8*******.**********98776..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-14132182IPR001471AP2/ERF domain
PROSITE profilePS5103223.459132190IPR001471AP2/ERF domain
SMARTSM003802.2E-36132196IPR001471AP2/ERF domain
CDDcd000182.55E-30132192No hitNo description
Gene3DG3DSA:3.30.730.106.6E-31133191IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23133191IPR016177DNA-binding domain
PRINTSPR003673.2E-12133144IPR001471AP2/ERF domain
PRINTSPR003673.2E-12172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MWGYSEETDI IDSLLMDDYS SDPSFLDSIH HFLISGDFEN DPVPSSSTTS CSDDFSDPAF  60
LDSIHHFLIS ENFDQNDVVV LTADPSATTT SSSSSGSQQS SSPAVTSDPT EEDPFPAVPI  120
EKKSSSETST WRFKGVRRRP WGKYAAEIRD PKRNGARIWL GTYETPEDAA LAYDRAAFEM  180
RGAKAKLNFP HLAGSTEYEP VRVTNGNKKR TADRTDGPPN PKRSKASA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28133190360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-28133197670ATERF1
3gcc_A2e-28133197670ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029331
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611585.15e-50ethylene-responsive transcription factor 13-like
TrEMBLA0A2C9VTM31e-48A0A2C9VTM3_MANES; Uncharacterized protein
STRINGLus100293311e-166(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-43ethylene-responsive element binding factor 13