PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029314
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 210aa    MW: 23500.9 Da    PI: 4.61
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029314genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-16100150356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y GVr+++ +g+++AeIr p+ ng  +r +lg++  +e+Aa a+++a+ +++g+
  Lus10029314 100 YLGVRRRP-WGKYAAEIRNPKRNG--ARNWLGTYECPEDAALAYDRAAFEMRGA 150
                  78******.**********98776..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-2699159No hitNo description
PROSITE profilePS5103221.95799157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2999158IPR001471AP2/ERF domain
SMARTSM003806.2E-3399163IPR001471AP2/ERF domain
PfamPF008473.1E-11100149IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21100158IPR016177DNA-binding domain
PRINTSPR003673.9E-12100111IPR001471AP2/ERF domain
PRINTSPR003673.9E-12139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSENIQALE FIRSQLLDDD KDSSRLNSNE APFYPGCLEN ESWSDILARL AVEENSAASV  60
QQPDIIDIDD DHDEDEEDGN ANKKPKVAPA PAPNVKARNY LGVRRRPWGK YAAEIRNPKR  120
NGARNWLGTY ECPEDAALAY DRAAFEMRGA KAKLNFPHLV GSDFEPVRVT HKKRGLPSLQ  180
PTPSTSSSLM CDYSSYVEED WNQSNAIWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2795162168ATERF1
3gcc_A2e-2795162168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029314
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375127.15e-45ethylene-responsive transcription factor 13
TrEMBLU5FRU21e-43U5FRU2_POPTR; Uncharacterized protein
STRINGLus100293141e-154(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-38ethylene-responsive element binding factor 13