PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029252

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 245aa MW: 27364.7 Da PI: 10.6201

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029252	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	90	148	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+++Hnh+ Lus10029252 90 ADSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYSSDHNHP 148 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-31	85	150	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-26	87	150	IPR003657	WRKY domain
SMART	SM00774	3.2E-36	89	149	IPR003657	WRKY domain
Pfam	PF03106	8.0E-26	91	148	IPR003657	WRKY domain
PROSITE profile	PS50811	31.869	91	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEEKYRRRSL SSLMIISSDE IVVQEESPND HSAESGPPDS PPYRDAKVAS TSTSSPKRSG 60 KRGAHKRVVS IPIKDVEGFR LKGENAPPPA DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG 120 CPARKQVERS RVDPTMLVIT YSSDHNHPWP PPSRIHHHHS TPANKRRHSA GYSSYTSRHP 180 RTRARTRTRT RTSKRKVHQL RERRADLTGG GICMVRGDGD DVVLVVDHHG LPDVRGEGYG 240 CGDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-21	66	150	6	79	Disease resistance protein RRS1
5w3x_D	1e-21	66	150	6	79	Disease resistance protein RRS1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	190	RTRARTRTRTR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029252

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021685996.1	1e-67	probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-49	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	B9H2F3	3e-64	B9H2F3_POPTR; Uncharacterized protein
STRING	Lus10029252	1e-177	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-51	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Lus10029252

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]