PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029225
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 182aa    MW: 20294.1 Da    PI: 10.3196
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029225genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.59.4e-3154107255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prl+Wtp LH++Fv+av++LG +++AtPk++l+lm+vkgLt++hvkSHLQ+YR 
  Lus10029225  54 PRLKWTPHLHSSFVRAVQKLGEQDRATPKSVLQLMEVKGLTISHVKSHLQMYRN 107
                  8****************************************************6 PP
2G2-like37.94e-121161452655
      G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   AtPk+ l+lm+v+gL+++hvkSHLQ+ R 
  Lus10029225 116 GATPKSDLQLMDVEGLSITHVKSHLQMNRN 145
                  59*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.06950110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2850108IPR009057Homeodomain-like
SuperFamilySSF466894.3E-1554108IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-2454109IPR006447Myb domain, plants
PfamPF002492.0E-855106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-10114145IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-8115147IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MADKEMEDGR DIKKRYLDLN EEAAAGNSTN TTSSEAGSEG KERVSRRYVR SALPRLKWTP  60
HLHSSFVRAV QKLGEQDRAT PKSVLQLMEV KGLTISHVKS HLQMYRNKKL DNQGKGATPK  120
SDLQLMDVEG LSITHVKSHL QMNRNKKLDN QGKGVSGEYI LRCWKLNVHQ MSACTGTTTS  180
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-1955109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1955109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1955109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1955109357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1955109458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022732211.19e-36putative Myb family transcription factor At1g14600
RefseqXP_028107181.11e-33two-component response regulator ARR12-like
TrEMBLA0A0S3QZ883e-32A0A0S3QZ88_PHAAN; Uncharacterized protein
STRINGLus100292251e-133(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.13e-31G2-like family protein