PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029110
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 502aa    MW: 53888 Da    PI: 6.2829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029110genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09327375355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10029110 327 NSHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 375
                  58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.74E-11322379No hitNo description
SuperFamilySSF474593.93E-17322393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17325391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEMDISEKGK SDMEKSNGDN NPMNYESSGA LSSDWRFGRN AAALSLVPGD GQMTSCSSAS  60
MGESFGPPPG LWDHQTSSRN IGFCDINIQN SGGTGTPVGM VRGGPASMSW NQPSSMLRDG  120
IFLPNAGILP PSLSQFPADP AFIERAARFS CFNSVNYGDH MAHPFGISEP PMGLYSRAGG  180
MMQGPPQEVF VGPSLHMDHA KIEGSPLKSE RKSESLVRSH DEVKPGGNND SDEAEFSGGG  240
GGQDDTAMLD ANGGKSSAKG VESKKRKRNG QDTKNEGTDG GSEFQQKVGK NQGSANHKAS  300
GENGKQGSPP PKEDYIHVRA RRGQATNSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLATVNP RLDFNLEGLL AKDILSRAVP SAGLSFSPDM  420
PMSYQPPPLH PSQPAGFPVM ESHHSDILRR SIASSSAEFK DPAQQLHGSW NDELHNVMQM  480
YGSNVPQGSQ EISAGDMKPE L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572050.10.0transcription factor bHLH49 isoform X2
TrEMBLB9RLE70.0B9RLE7_RICCO; Uncharacterized protein
STRINGLus100291100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-105bHLH family protein