PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10028986

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 156aa MW: 17345.9 Da PI: 7.3046

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10028986	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.6	3.3e-41	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+ dPvyG++g i lq+++ +l+++la ++ Lus10028986 12 SCAACKFLKRRCTSNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLVDPVYGCIGAIAMLQRKMVELQVDLAIAR 109 6*********************************************************************************************9998 PP DUF260 99 ee 100 ++ Lus10028986 110 AR 111 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.671	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-40	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MKSHHEPRSS SSCAACKFLK RRCTSNCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILTEV 60 PEEQREDTVN SLAYEAEARL VDPVYGCIGA IAMLQRKMVE LQVDLAIARA RLLRCTSAPT 120 GEIGTTFGEF PSMIDGFEQE VPLPISDFSQ FPYIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	7	127	6	126	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	7	127	6	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10028986

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618399.1	1e-78	LOB domain-containing protein 21
Swissprot	Q9SRL8	1e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2C9VL13	3e-77	A0A2C9VL13_MANES; Uncharacterized protein
STRING	Lus10028986	1e-112	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-62	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Lus10028986

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]