PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24152.2 Da PI: 8.6443 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 37 | 83 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+++E+rRRdriN + +Lr+l+Pk+ K++Ka+ L ++e +++L Lus10028978 37 RSHSQAEKRRRDRINAQLTTLRKLIPKS-----DKMDKAALLGSVIEQVRDL 83 78*************************8.....7***********9988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.862 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-13 | 35 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.47E-9 | 37 | 84 | No hit | No description |
Pfam | PF00010 | 5.1E-10 | 37 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-14 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-10 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 6.64E-5 | 128 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 5.1E-5 | 128 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDFTDNGDES AFPFSWSNCS FFPVHESAED KAASSSRSHS QAEKRRRDRI NAQLTTLRKL 60 IPKSDKMDKA ALLGSVIEQV RDLKSKANEV EKQVTVPSEI DEISVDCCDV GGGGGGGDDN 120 NVFFVRASLT CEDRPELLSE LIRMVKGQRL EIVHADITSV GGRVKSVFVF YNNGGGDKRS 180 VVSGIKQSLN VVLSRITSAT VPSSYRIRSK RQRFFMPSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028978 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311240.1 | 4e-83 | transcription factor bHLH51 isoform X1 | ||||
Refseq | XP_024463294.1 | 4e-83 | transcription factor bHLH51 isoform X1 | ||||
Refseq | XP_024463295.1 | 4e-83 | transcription factor bHLH51 isoform X1 | ||||
TrEMBL | B9HHS9 | 8e-82 | B9HHS9_POPTR; Uncharacterized protein | ||||
STRING | Lus10028978 | 1e-160 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10028978 |