PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028934
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 738aa    MW: 80787.2 Da    PI: 6.4752
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028934genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.54.7e-1033747362374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+  l+ + + + +   p++ ++ +++ ++ a+k+fsevsP+++f ++t+N
  Lus10028934 374 LDQLYKAAELVGTGNFTHAQGILARLNQQLSPIGKPLHRAAFYFKEALQLLLMTNNNPVTAPPLPRTPTPFDVIFKMGAYKVFSEVSPLIQFVNFTCN 471
                  679***************************************************99999999999999999*************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLr 195
                  qa+lea+e ++r+Hi+Dfdi+ G+QW++++q+L  R++gppsl+iT+++sp++++  el  ++e+L++fA+e+gv+fe +v+  +  + ++++l  +r
  Lus10028934 472 QALLEALEDSDRIHIVDFDIGFGAQWASFMQELP-RSRGPPSLKITAFASPSTHHPIELGLMRENLTQFANEIGVSFELDVVNLDslDQNCFSLPIFR 568
                  *********************************6.789*******************************************96662344566777788 PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                   +++Ea+aVn+ +      +++ +l+s    +L+lvk+lsPk+vv  ++ +d+++ +F +++l+al+ y  lf+sl+a    +s++ +k+Er+ll+++
  Lus10028934 569 ASENEAVAVNFPIWS--CSHQPSALPS----LLRLVKQLSPKIVVSLDRGCDRSDLPFPQHILHALQSYIHLFESLDAV-NVTSDALNKIERFLLQPR 659
                  888********9954..4445677777....*********************************************665.5799************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i++ v  + ++      ++ +W+  + +aGF+pv++s+++++qa+++l++++++g++ve++++slvl+W++r+L+s+SaWr
  Lus10028934 660 IESTVLGRLRA----PDKMPNWKTIFASAGFSPVTFSNFTETQAECVLKRTQVRGFHVEKRHASLVLCWQRRELISASAWR 736
                  ******99998....999**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.449347716IPR005202Transcription factor GRAS
PfamPF035141.6E-100374736IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MPFHLEGKGG LDTASIFSQQ EAWKLQHHNN KQEVNSFTEP ISVLHMRRSP SPPTSASTLS  60
SSFNGTAGGT TPTAGGDKAL NNNDRKDEWA NELQPIPTGG LDIVSSVGER CGLGLYDWEN  120
MLSEPTQEQS LLRWISGGDV DDSSFGLKHL LQSNNNNNGS GNNNPLDFDG IVDQGHGGFE  180
GIGGIGGSIG SNLGAFPASG FVGNNGRIAQ AAAGLVSPSS SGSGLVNFKA NNTLVNLPAA  240
ASLPSAMLYH PQQQVDALDE KPPHILMNMN PHQQPAPNFF FPLPFPQQDH YHQQQPQPKR  300
QNSGGNNIME PNIPPMLPKL PFSDPGDDIF LRKQQQHQQF PPGVPFLLHQ GIQPPLMGKD  360
DPGGGGQQQQ HALLDQLYKA AELVGTGNFT HAQGILARLN QQLSPIGKPL HRAAFYFKEA  420
LQLLLMTNNN PVTAPPLPRT PTPFDVIFKM GAYKVFSEVS PLIQFVNFTC NQALLEALED  480
SDRIHIVDFD IGFGAQWASF MQELPRSRGP PSLKITAFAS PSTHHPIELG LMRENLTQFA  540
NEIGVSFELD VVNLDSLDQN CFSLPIFRAS ENEAVAVNFP IWSCSHQPSA LPSLLRLVKQ  600
LSPKIVVSLD RGCDRSDLPF PQHILHALQS YIHLFESLDA VNVTSDALNK IERFLLQPRI  660
ESTVLGRLRA PDKMPNWKTI FASAGFSPVT FSNFTETQAE CVLKRTQVRG FHVEKRHASL  720
VLCWQRRELI SASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-3337973524377Protein SCARECROW
5b3h_D3e-3337973524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028934
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021685795.10.0scarecrow-like protein 27
SwissprotO813161e-129SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2C9WAR10.0A0A2C9WAR1_MANES; Uncharacterized protein
STRINGLus100289340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-129GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]