PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 738aa MW: 80787.2 Da PI: 6.4752 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 336.5 | 4.7e-103 | 374 | 736 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L+++Ae v +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+ l+ + + + + p++ ++ +++ ++ a+k+fsevsP+++f ++t+N Lus10028934 374 LDQLYKAAELVGTGNFTHAQGILARLNQQLSPIGKPLHRAAFYFKEALQLLLMTNNNPVTAPPLPRTPTPFDVIFKMGAYKVFSEVSPLIQFVNFTCN 471 679***************************************************99999999999999999*************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLr 195 qa+lea+e ++r+Hi+Dfdi+ G+QW++++q+L R++gppsl+iT+++sp++++ el ++e+L++fA+e+gv+fe +v+ + + ++++l +r Lus10028934 472 QALLEALEDSDRIHIVDFDIGFGAQWASFMQELP-RSRGPPSLKITAFASPSTHHPIELGLMRENLTQFANEIGVSFELDVVNLDslDQNCFSLPIFR 568 *********************************6.789*******************************************96662344566777788 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +++Ea+aVn+ + +++ +l+s +L+lvk+lsPk+vv ++ +d+++ +F +++l+al+ y lf+sl+a +s++ +k+Er+ll+++ Lus10028934 569 ASENEAVAVNFPIWS--CSHQPSALPS----LLRLVKQLSPKIVVSLDRGCDRSDLPFPQHILHALQSYIHLFESLDAV-NVTSDALNKIERFLLQPR 659 888********9954..4445677777....*********************************************665.5799************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i++ v + ++ ++ +W+ + +aGF+pv++s+++++qa+++l++++++g++ve++++slvl+W++r+L+s+SaWr Lus10028934 660 IESTVLGRLRA----PDKMPNWKTIFASAGFSPVTFSNFTETQAECVLKRTQVRGFHVEKRHASLVLCWQRRELISASAWR 736 ******99998....999**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.449 | 347 | 716 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-100 | 374 | 736 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence Send to blast |
MPFHLEGKGG LDTASIFSQQ EAWKLQHHNN KQEVNSFTEP ISVLHMRRSP SPPTSASTLS 60 SSFNGTAGGT TPTAGGDKAL NNNDRKDEWA NELQPIPTGG LDIVSSVGER CGLGLYDWEN 120 MLSEPTQEQS LLRWISGGDV DDSSFGLKHL LQSNNNNNGS GNNNPLDFDG IVDQGHGGFE 180 GIGGIGGSIG SNLGAFPASG FVGNNGRIAQ AAAGLVSPSS SGSGLVNFKA NNTLVNLPAA 240 ASLPSAMLYH PQQQVDALDE KPPHILMNMN PHQQPAPNFF FPLPFPQQDH YHQQQPQPKR 300 QNSGGNNIME PNIPPMLPKL PFSDPGDDIF LRKQQQHQQF PPGVPFLLHQ GIQPPLMGKD 360 DPGGGGQQQQ HALLDQLYKA AELVGTGNFT HAQGILARLN QQLSPIGKPL HRAAFYFKEA 420 LQLLLMTNNN PVTAPPLPRT PTPFDVIFKM GAYKVFSEVS PLIQFVNFTC NQALLEALED 480 SDRIHIVDFD IGFGAQWASF MQELPRSRGP PSLKITAFAS PSTHHPIELG LMRENLTQFA 540 NEIGVSFELD VVNLDSLDQN CFSLPIFRAS ENEAVAVNFP IWSCSHQPSA LPSLLRLVKQ 600 LSPKIVVSLD RGCDRSDLPF PQHILHALQS YIHLFESLDA VNVTSDALNK IERFLLQPRI 660 ESTVLGRLRA PDKMPNWKTI FASAGFSPVT FSNFTETQAE CVLKRTQVRG FHVEKRHASL 720 VLCWQRRELI SASAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-33 | 379 | 735 | 24 | 377 | Protein SCARECROW |
5b3h_D | 3e-33 | 379 | 735 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028934 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021685795.1 | 0.0 | scarecrow-like protein 27 | ||||
Swissprot | O81316 | 1e-129 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A2C9WAR1 | 0.0 | A0A2C9WAR1_MANES; Uncharacterized protein | ||||
STRING | Lus10028934 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13269 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-129 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10028934 |
Publications ? help Back to Top | |||
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