 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lus10028794 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
SRS |
| Protein Properties |
Length: 201aa MW: 22121.8 Da PI: 8.7332 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10028794 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 121.7 | 9.2e-38 | 22 | 168 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102
+ +C+dCGnqak++C + RCR CC+ r ++C+thv stWvp++ rr +q+++ +s+++ s ++++ + ++++ ++ le
Lus10028794 22 GRRCEDCGNQAKRECRYWRCRRCCRRRKLECQTHVSSTWVPTSLRRLQQAAARGSSTTH-------PSTSHQQ--------HHVLLHHHHHIPSDLES 104
679******************************************98644433322211.......1111111........11222233455667889 PP
DUF702 103 sslPeevsseavfrcvrvssv.........ddge....eelaYqtavsigGhvfkGiLydqGlee 154
+++P ev s+a f+c +v+s+ dd + +e+aY+t+vsigGh+f+GiLydqG+++
Lus10028794 105 ENFPGEVTSMATFHCCKVRSLrldggrnhgDD-DrlvfDEYAYRTSVSIGGHLFNGILYDQGPQS 168
99****************99755444433322.1344479**********************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MMNGGGGETS AGSLRGGGAV AGRRCEDCGN QAKRECRYWR CRRCCRRRKL ECQTHVSSTW 60
VPTSLRRLQQ AAARGSSTTH PSTSHQQHHV LLHHHHHIPS DLESENFPGE VTSMATFHCC 120
KVRSLRLDGG RNHGDDDRLV FDEYAYRTSV SIGGHLFNGI LYDQGPQSER RQSSATAGVV 180
LAPLPPLVPC TFPLPTLHTQ *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 32 | 49 | KRECRYWRCRRCCRRRKL |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G66350.1 | 2e-25 | Lateral root primordium (LRP) protein-related |
