PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028584
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 459aa    MW: 51314.4 Da    PI: 7.6146
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028584genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix103.61.5e-32272357187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k evlaLi +r++++e+++++  k+plWee+s  m++ g++r++k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a
  Lus10028584 272 RWPKPEVLALIGLRTQLDEKYQENVPKGPLWEEISTEMKKLGYNRNAKRCKEKWENINKYFKKVKESSRKR-PEDSKTCPYFHQLDA 357
                  8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-22271358No hitNo description
PROSITE profilePS500907.039271329IPR017877Myb-like domain
CDDcd122037.79E-30271336No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGTIPSGGGN NGTSTTPAAN NTTMSINFTI TPPHHQQQSH LSPTVVTPAE PISSSQPLNP  60
SPQSVFHPSY NHHRGQHHNG HRSISATTHL FSSSTSSSTA SDEKMEEKGT KSRKRKRKLR  120
DFFHRLTKDV IKKQEELQKR FLETVEKLDR ERLDREGAWR VQEMARINRE HEILIQERST  180
AAAKDAAVLA LLQKVSGGGV RGAQITPRKL SLPSPPPPIL SQPALVSQNN PTHIMVQKQK  240
PAPITTNVGG RIESNGEDVH TVATITTTTS SRWPKPEVLA LIGLRTQLDE KYQENVPKGP  300
LWEEISTEMK KLGYNRNAKR CKEKWENINK YFKKVKESSR KRPEDSKTCP YFHQLDALYR  360
EKSKVMEQPT NNPTISSGAA YIEANPIRAV EPATTIHHWF PPPPPPPPHP PTEEEDEDEE  420
VDEDDYENEE TDEEVETGVR GFEIVHNKPA MVVGGNGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028584
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ391171e-76TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1S3XDN44e-88A0A1S3XDN4_TOBAC; trihelix transcription factor GTL1-like
STRINGLus100285840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-71Trihelix family protein