PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028583
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 137aa    MW: 15803.4 Da    PI: 4.8963
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028583genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.54.9e-201493887
     trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                 m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Lus10028583  1 MKRIGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 49
                 789******************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-13150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MKRIGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YRERQSNLVP  60
ILVQPEQQWP PQPAAVASQQ PAPPPPHPVH QHRPDAVMED MESEDDNEDD DDEEGDDDHD  120
GGSYELVSNK PTSMNM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071391e-34AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBankAL6065871e-34AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBankAP0149601e-34AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-34CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551971e-34CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.
GenBankEU9568431e-34EU956843.1 Zea mays clone 1575747 mRNA sequence.
GenBankKM6660761e-34KM666076.1 Ananas bracteatus clone 51301b microsatellite sequence.
GenBankX682611e-34X68261.1 O.sativa gt-2 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302180.22e-43trihelix transcription factor GT-2
SwissprotQ391176e-30TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K2BEP75e-42A0A2K2BEP7_POPTR; Uncharacterized protein
STRINGLus100285832e-97(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-31Trihelix family protein