PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028582
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 328aa    MW: 36161.5 Da    PI: 9.6167
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028582genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.32.8e-201691787
     trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                 m+ ++r+++ k+plW++vs+km+e g++rs+k+Ckek+en+ k++k++k+g+  +   + +t+++f++lea
  Lus10028582  1 MDATFRDASVKGPLWDDVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRTAK--HDGKTYRFFQELEA 69
                 6889*************************************************95..66678******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.44E-14149No hitNo description
PfamPF138371.6E-13569No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDATFRDASV KGPLWDDVSR KMAELGYHRS SKKCKEKFEN VYKYHKRTKD GRTAKHDGKT  60
YRFFQELEAF DSHLSPAGAP PPPPQQHKPA VQLPFPAVNP PPAPPPTHKP AVQLQIPAVN  120
PPPPATVPST AAVLPPQSEA EIQGRGGGRN KRKRKWQDLW ERLMREVVNK QEEMQRKFLE  180
AIEKREKERI TREEYWRNQE MARINREREI LAQERSIAAS KDAAAMSFLQ PLAENSDPDL  240
DLLRYRRSSC SSAAASSASS SHPSHSSSAT TSATSAASTG AAAIYNDSIS SYASAINGGS  300
RASTTEPTPI GECELVSMAE GRDRSVD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028582
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851634.18e-78PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391172e-62TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2I0JH921e-78A0A2I0JH92_PUNGR; Uncharacterized protein
STRINGLus100285820.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-34Trihelix family protein