PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028581
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 363aa    MW: 41761.4 Da    PI: 5.0429
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028581genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.84e-2581178185
     trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt+ +v++Li+a+++++e+ ++ +            +kk++W++vsk+m+ergf +sp+qC++k+++lnkrykk++++ +++ +++++++ +++d +
  Lus10028581  81 KWTETMVKLLITAVSYVGEEGSDCCggngkkrtfvalQKKGKWKSVSKAMSERGFLVSPQQCEDKFNDLNKRYKKLNDIIGRGtSCQVVENPALLDGI 178
                  7*********************966667788999999*********************************************9569999988887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-2279205No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEGNASQGGM ISRVPPFVDL QGSMTRIHHR HAQQQHEGFA LTMGRAKNLN HSDDDNDEDD  60
DELNRTKKGS LSSSSHWQRV KWTETMVKLL ITAVSYVGEE GSDCCGGNGK KRTFVALQKK  120
GKWKSVSKAM SERGFLVSPQ QCEDKFNDLN KRYKKLNDII GRGTSCQVVE NPALLDGIDY  180
LSEKEKGDVR KILSSKHLFY EEMCSYHNGN RLHLPHDPAL QRSLQLALKS NRGNDDFDDV  240
DDDEDDDEDD DEDGDEDGGD GDGKRLRQED VDMNQVCHET SSKGGLVQKE WIESRTLQLE  300
EERLQIEVEK LELEKERFRW QRFSRKRDQE LEMLKMENER MKLENERMKL ELKRKVMSAD  360
FS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028581
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451284.11e-144uncharacterized protein LOC7467820
TrEMBLA0A2K2BEQ01e-143A0A2K2BEQ0_POPTR; Uncharacterized protein
STRINGLus100285810.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-110