PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028511
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 536aa    MW: 57827.5 Da    PI: 5.7968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028511genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS152.83.1e-472373691143
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++Ll+cAeav++++ +la+al+++   la+++  +m+++a+yf+eALa+r+++    +y    + e s    s++l +   f+e++P+lkf+h+ta
  Lus10028511 237 LVHTLLACAEAVQQENVKLADALVKHTGLLAASQTGSMRKVATYFAEALARRIYK----IY-PQDCLEPS---YSDTLEM--HFYETCPYLKFAHFTA 324
                  689****************************************************....44.23333333...5555555..5*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslR 143
                  NqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+ pp +R
  Lus10028511 325 NQAILEAFATADRVHVIDFGLKQGMQWPALMQALAIRPRRPPAFR 369
                  ******************************************999 PP
2GRAS196.31.9e-60380532220374
         GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                  ++  +d+vL+ +k ++Pk+v+vveqea+hn++ F++rf+eal+yys+lfdsle +     +++ ++++ +lgr+i+nvvaceg +r+erhetl +Wr 
  Lus10028511 380 QSAGIDKVLSSIKAMKPKIVTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGS---SPSQDLVMSELYLGRQICNVVACEGGDRVERHETLTQWRG 474
                  2334688*********************************************999...358899********************************** PP

         GRAS 318 rleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+e+aGF pv+l+++a+kqa++ll+ ++ +dgy+vee++gsl+lgW++rpL+++SaW+
  Lus10028511 475 RMESAGFDPVHLGSNAYKQASMLLALFAgGDGYKVEENDGSLMLGWHTRPLIATSAWQ 532
                  *********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011293.2E-3752125No hitNo description
PfamPF120416.4E-3852119IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098527.141211535IPR005202Transcription factor GRAS
PfamPF035141.1E-44237369IPR005202Transcription factor GRAS
PfamPF035146.5E-58380532IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MKRDHHQASC GYGGGRVDDS TAAAAASASM AAPPAAGKGK LWEEDQDAGG MDELLAVLGY  60
KVRASDMADV AQKLEQLEMV MVAAQDDGIS HLASDTVHYN PSDLSAWYDS MLSELNNTPS  120
VPLDSTSLVS GGAGGSSSMD FSSASQTHQS SSIFRDDSEY DLRAIPGVAA FPQAESENDN  180
SRKRIKTSHG GSSXTNSSSS NTAPSSSSSS SPSVALTVES STRPVVIVDS QEAGVRLVHT  240
LLACAEAVQQ ENVKLADALV KHTGLLAASQ TGSMRKVATY FAEALARRIY KIYPQDCLEP  300
SYSDTLEMHF YETCPYLKFA HFTANQAILE AFATADRVHV IDFGLKQGMQ WPALMQALAI  360
RPRRPPAFRF ILHRPRLHSQ SAGIDKVLSS IKAMKPKIVT VVEQEANHNG PVFVDRFTEA  420
LHYYSSLFDS LEGSSPSQDL VMSELYLGRQ ICNVVACEGG DRVERHETLT QWRGRMESAG  480
FDPVHLGSNA YKQASMLLAL FAGGDGYKVE ENDGSLMLGW HTRPLIATSA WQLAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3524453126378Protein SCARECROW
5b3h_A9e-3624453125377Protein SCARECROW
5b3h_D9e-3624453125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028511
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891377.10.0DELLA protein GAI
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A192ADF90.0A0A192ADF9_PYRPY; DELLA protein GAI1
STRINGLus100285110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-103RGA-like 1