PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028457
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 349aa    MW: 38011.2 Da    PI: 6.3415
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028457genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1952113257
                  T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+t+t++q+++L++ +++   r psae+++++++ l    +++ ++V++WFqN++a+e++
  Lus10028457  52 STRWTPTTDQIRILKDIYYNdgVRSPSAEQIQRISADLrkygKIEGKNVFYWFQNHKARERQ 113
                  58*****************8779*************************************97 PP
2Wus_type_Homeobox113.41.1e-3651115265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL+++y+  G+r+P++e+iqri+a L++yGkie+kNVfyWFQN+kaRerqk+
        Lus10028457  51 SSTRWTPTTDQIRILKDIYYnDGVRSPSAEQIQRISADLRKYGKIEGKNVFYWFQNHKARERQKK 115
                        789***************9769*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-1144118IPR009057Homeodomain-like
PROSITE profilePS5007110.38248114IPR001356Homeobox domain
SMARTSM003895.4E-550118IPR001356Homeobox domain
PfamPF000461.1E-1653113IPR001356Homeobox domain
CDDcd000866.65E-653115No hitNo description
Gene3DG3DSA:1.10.10.601.3E-653113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEQPQQLLNH LHHHQPNNNN MDGGGNNNND NNNGSAAKGG GSGSSFLCRQ SSTRWTPTTD  60
QIRILKDIYY NDGVRSPSAE QIQRISADLR KYGKIEGKNV FYWFQNHKAR ERQKKRFTND  120
PPSQQQQVII PQRANIVANT TTTTNLLNSA HNWKPSVAAQ SSSGVFGIGQ MGSYAGYGHQ  180
VTMEKSFRDC SISSAGGSKV VGGGGGQYSF GLVEFDQYGG GGGGNSFFDK MKSSSSSIHD  240
HEAQVVALED DDDEDDEYDH DDDRTYNHHH QEIETLPLFP THREDMISGF YGGGIKHQYG  300
SSAAPPPAAD TRGEGGGRCR EGGGPTTTPF ALELSLNSFT GQYSSNMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315323GGRCREGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8851834e-92HQ885183.1 Linum usitatissimum clone Contig1041 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672272.17e-72protein WUSCHEL
TrEMBLM5VSN55e-69M5VSN5_PRUPE; Uncharacterized protein
STRINGLus100284570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-37WOX family protein