PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028333
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 188aa    MW: 20123.3 Da    PI: 4.644
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028333genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.6e-133885556
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                 ++ +rk +NRe+ArrsR+RK++ ++ L+  v++L++eN     e+ +  ++ 
  Lus10028333 38 RKRKRKLSNRESARRSRLRKQKHMDDLAAQVAQLKKENA----EILTSMNLN 85
                 5789**********************************7....555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.4E-173498IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.683683IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.9E-103680No hitNo description
SuperFamilySSF579591.04E-103887No hitNo description
PfamPF001704.6E-113879IPR004827Basic-leucine zipper domain
CDDcd147022.49E-183989No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASSSTGASS GSSGGGGALL LRNSSSEEDL QAAVVDERKR KRKLSNRESA RRSRLRKQKH  60
MDDLAAQVAQ LKKENAEILT SMNLNTQLLL GVEADNSVLR AQADELNHRL ESLGEIVSYV  120
DSLRNGPVQA SGAPNNATGS SGTTSDGDDL FEEAAGTDEC LMTTNEMNPW ICSSSSYQPM  180
MMDMVMY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643ERKRKRKL
23742RKRKRK
33758RKRKRKLSNRESARRSRLRKQK
45056RRSRLRK
55057RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028333
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802821.12e-44PREDICTED: ocs element-binding factor 1-like
RefseqXP_016440531.12e-44PREDICTED: bZIP transcription factor 53-like
SwissprotC0Z2L55e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1U7YLF84e-43A0A1U7YLF8_NICSY; ocs element-binding factor 1-like
TrEMBLQ941L74e-43Q941L7_TOBAC; BZIP transcription factor BZI-2
STRINGLus100283331e-134(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-37basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]