PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028286
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-X1
Protein Properties Length: 879aa    MW: 98553.3 Da    PI: 8.3902
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028286genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.91.4e-05188206120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG H C  lCH+GpCppCp+
  Lus10028286 188 CG-HFCLLLCHPGPCPPCPK 206
                  **.***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.88E-673147No hitNo description
PROSITE patternPS01359075141IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.0022188206IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011188205IPR000967Zinc finger, NF-X1-type
CDDcd060082.47E-8230276No hitNo description
SMARTSM004380.036240259IPR000967Zinc finger, NF-X1-type
PfamPF014220.0095242257IPR000967Zinc finger, NF-X1-type
CDDcd060082.19E-6283327No hitNo description
SMARTSM004381.5293313IPR000967Zinc finger, NF-X1-type
CDDcd060087.50E-8338387No hitNo description
SMARTSM0043820348368IPR000967Zinc finger, NF-X1-type
PfamPF0142248350367IPR000967Zinc finger, NF-X1-type
CDDcd060081.29E-6391439No hitNo description
SMARTSM004380.2401420IPR000967Zinc finger, NF-X1-type
PfamPF014220.0088401418IPR000967Zinc finger, NF-X1-type
CDDcd060085.75E-11418466No hitNo description
PfamPF014220.0031422446IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0027428447IPR000967Zinc finger, NF-X1-type
SMARTSM0043857485506IPR000967Zinc finger, NF-X1-type
PfamPF0142214495505IPR000967Zinc finger, NF-X1-type
SMARTSM00438270514559IPR000967Zinc finger, NF-X1-type
PfamPF014223.5514524IPR000967Zinc finger, NF-X1-type
SMARTSM0043850596630IPR000967Zinc finger, NF-X1-type
PfamPF014220.44596606IPR000967Zinc finger, NF-X1-type
SMARTSM004380.06640658IPR000967Zinc finger, NF-X1-type
PfamPF0142260642657IPR000967Zinc finger, NF-X1-type
SMARTSM004382.7703724IPR000967Zinc finger, NF-X1-type
PfamPF0142224704717IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MSSAGGKQQS FTDSDSDSDH SHGESKSSLR HTDLSNSIFK SYFGHTSTAT TSPSPHDLSK  60
IQSFLNSSSS GALSCLICLE RIRPSDPTWS CPSLCFDVFH LLCIQSWARQ ASDVAATRAV  120
TRLPITSDKA SETALWNCPK CRSAYSKSQI PKSYCCFCGK LENPPNDNPW ILPHSCGEVC  180
DRPLKNNCGH FCLLLCHPGP CPPCPKLVKG SCYCGKIEDV RRCGFKVFSC NSRCNKLLEC  240
KKHKCKEICH DGECPPCHER GVYSCLCGKK QEERECCVRE FQCENPCKKE LSCGKHLCER  300
GCHSQEGCGE CPLQGKRTCP CGKRVHEGMA CDIAVPLCGD TCGKKLSCRF HRCHERCHRG  360
QCVENCRMVV SKTCRCGSLK KEVPCYQDLA CERKCQSMRD CGRHACRRRC CDGNCPPCGE  420
VCGKKLRCRN HKCPSPCHRG PCAPCPVMVP ISCFCAETHF EVPCGTEMDQ KPPKCRKLCE  480
IPPLCRHAPY IKPHKCHYGT CPPCRLVCEG EYRCGHKCQL RCHDPRPPPR PEFTLRPKKK  540
RQIHQPECTP GSPCPPCPEL VWRPCVGQHF AAEKMMVCAN KPEFSCENLC GNPLPCGNHY  600
CTKSCHAVKF NPSKSQGPIG TSETCEKCNL RCEKKREPSC PHPCTLRCHP DDCPPCKALV  660
KRSCHCGSLV HAFECMYYNS LSKKEQISVR SCGGYCHRKL PNCTHLCPET CHPGDCPSPD  720
KCSKKVFVRC RCQTLKKEWL CKDVQAAYHK AGSDPKDVSR NQFGHGLLPC NSDCKSKVQV  780
AEQELHLRTP KDVEKEKDGP TDTHPPRRRK RRQQMQEEKQ LSSLEKILPA LKKLILVAVL  840
IVTLIAALYF GYKGLMWLSD YMNEVEEQRH GSKRYPRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1805809PRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028286
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674062.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB9T5650.0B9T565_RICCO; Nuclear transcription factor, X-box binding, putative
STRINGLus100282860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors