PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WOX | ||||||||
Protein Properties | Length: 240aa MW: 27731.8 Da PI: 8.7497 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.4e-21 | 36 | 97 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps++++++++++l +++ ++V++WFqN++a+e++ Lus10028271 36 KCGRWNPTPEQVKVLTDLFRSgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 97 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.5 | 5.1e-37 | 36 | 99 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+PtpeQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ Lus10028271 36 KCGRWNPTPEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 99 678***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.062 | 33 | 98 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-4 | 35 | 102 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-18 | 37 | 97 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-12 | 38 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.56E-5 | 39 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 39 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEERMASSGF CIAKARTHLR NKPNNTTADQ YGSGTKCGRW NPTPEQVKVL TDLFRSGLRT 60 PSTDQIQKIS SQLSFYGKIE SKNVFYWFQN HKARERQKRR RVSVDDNDVV FVAPPAPAPT 120 LTTSHGLLRR HDHFSSSARY VSDSYINRRH HQEEEEPAAA ERVMETLQLF PINPFHEPVD 180 HHDQMGGDKF KSSFQANDYH YYNHHHYYYR KDANNNTGFP CGFGSEMDHP PLDLRLSFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 101 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028271 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021648231.1 | 5e-78 | WUSCHEL-related homeobox 5-like | ||||
TrEMBL | A0A067LC76 | 2e-70 | A0A067LC76_JATCU; Uncharacterized protein | ||||
STRING | Lus10028271 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6014 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 9e-48 | WUSCHEL related homeobox 5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10028271 |