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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10027806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 239aa MW: 26908.5 Da PI: 10.2128 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99 | 3.4e-31 | 11 | 65 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt+eLH+rF eav+qLGG+++AtPk il+ m++ gLt++hvkSHLQkYR+ Lus10027806 11 KDRLRWTQELHDRFEEAVTQLGGPDRATPKGILKSMGISGLTIYHVKSHLQKYRI 65 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.013 | 8 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-29 | 10 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-17 | 11 | 65 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 11 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-17 | 96 | 141 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVSRRSDGAG KDRLRWTQEL HDRFEEAVTQ LGGPDRATPK GILKSMGISG LTIYHVKSHL 60 QKYRISKFIP ETPNRGMERR NISEMLPNFS ATSGAQLNEA LQMQLEVERR LSDHLEVQRS 120 LKVKIEAQGR FLERIVEEHK NSNRSSSAAF SKPMMKPLPT MSLPSLESES DSEGDRLNEV 180 QSSSAAQDFR PLKRLRSEND LLPPRYRVSA AQGKNLGWNS INNNNMVSCP PSLVPSFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-22 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10027806 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624319.1 | 1e-94 | myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 2e-52 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2C9VAU8 | 3e-93 | A0A2C9VAU8_MANES; Uncharacterized protein | ||||
STRING | Lus10027806 | 1e-175 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-54 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10027806 |