PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10027797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | Dof | ||||||||
Protein Properties | Length: 197aa MW: 21963.3 Da PI: 8.479 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.6 | 2e-36 | 21 | 85 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg....grrknkkss 62 ++++l+cprCds+ntkfCyynny+lsqPr+fCk CrryWtkGGalrn+PvGg g+rkn k+s Lus10027797 21 EQEQLNCPRCDSSNTKFCYYNNYNLSQPRFFCKDCRRYWTKGGALRNIPVGGggggGTRKNAKRS 85 57899*********************************************862222689988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-24 | 13 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-31 | 23 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.158 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MQDPASEFPM INQQLAPPFP EQEQLNCPRC DSSNTKFCYY NNYNLSQPRF FCKDCRRYWT 60 KGGALRNIPV GGGGGGGTRK NAKRSSNSNQ KRANPDPIPD SSPSVTRRLV SEPTSPPSSS 120 SVPLGADQDP TRLYGPEPGR DTGLDSELSQ FPHQIWFRKS EMQWKHLELE EPQQIRKEPA 180 AGDATGFHLW PSSPNR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10027797 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021645559.1 | 1e-47 | dof zinc finger protein DOF3.1-like | ||||
Refseq | XP_021645560.1 | 1e-47 | dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A3Q9EDL7 | 4e-45 | A0A3Q9EDL7_POPTO; DOF zinc finger protein 1 | ||||
STRING | Lus10027797 | 1e-144 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6181 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-34 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10027797 |