PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027458
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 294aa    MW: 32985.4 Da    PI: 6.6372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027458genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-121663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l  ++ + G g+ +t++ + g+ R +k+c++rw +yl
      Lus10027458 16 KGLWSPEEDHRLRSYIVKNGHGCRTTVPIHAGLQRNGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding48.32.4e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++ E++ +v ++++lG++ W+ I+++++ gRt++++k++w++yl
      Lus10027458  69 RGLFSAYEEDTIVTLHRLLGNK-WSQISQHLP-GRTDNEIKNHWHSYL 114
                      6779999***************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-17866IPR009057Homeodomain-like
PROSITE profilePS5129414.311163IPR017930Myb domain
SuperFamilySSF466893.67E-2413110IPR009057Homeodomain-like
SMARTSM007171.6E-41565IPR001005SANT/Myb domain
PfamPF002492.5E-91663IPR001005SANT/Myb domain
CDDcd001674.59E-51963No hitNo description
PROSITE profilePS5129425.06164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2467118IPR009057Homeodomain-like
SMARTSM007173.5E-1368116IPR001005SANT/Myb domain
PfamPF002499.1E-1469114IPR001005SANT/Myb domain
CDDcd001677.66E-1072114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEECTDQKPT KPKHRKGLWS PEEDHRLRSY IVKNGHGCRT TVPIHAGLQR NGKSCRLRWI  60
NYLRPGLKRG LFSAYEEDTI VTLHRLLGNK WSQISQHLPG RTDNEIKNHW HSYLKKKLTK  120
SQGIASHDNN NKIQQCPTSC NSDNNTSTYH NLSPDHRDES SPSSTTTTAV DQCSVPLFPP  180
KLMFAEWLSM DSFPANPAAE PLFCNKDFAS GSHDFGLDIP NGGFFGDNLF QGYQLCGERG  240
GYQNSMATTV SDGSASDVFS SQFNFEDQSS DNSDQFVEFC SDFQINSDSV LYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21161187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027458
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744440.0JX174444.1 Linum usitatissimum clone LuBAC317I7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321912.39e-84LOW QUALITY PROTEIN: transcription factor LAF1
SwissprotQ9M0K45e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2C9UJ635e-82A0A2C9UJ63_MANES; Uncharacterized protein
STRINGLus100274580.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-60myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]