PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027412
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 225aa    MW: 24435.2 Da    PI: 4.4852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027412genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184998255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr+++ +g+Wv+e+r+p   +k+ r++lg+f t e+Aa+a++ a+++l+g
  Lus10027412 49 IYRGVRQRS-TGKWVCEVREP---NKKSRIWLGTFPTVEMAARAHDVAALALRG 98
                 69****999.9******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.80E-3048108No hitNo description
PfamPF008472.0E-144898IPR001471AP2/ERF domain
SMARTSM003803.2E-3149112IPR001471AP2/ERF domain
PROSITE profilePS5103221.91849106IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2149108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-3249108IPR001471AP2/ERF domain
PRINTSPR003677.1E-95061IPR001471AP2/ERF domain
PRINTSPR003677.1E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDQQLCHMAG PSRQSDDGSS AAAEGMTLAS NCPKKRAGRK KFTETRHPIY RGVRQRSTGK  60
WVCEVREPNK KSRIWLGTFP TVEMAARAHD VAALALRGSS ACLNFADSAT RLRIPESADT  120
KEIQRAAAEA AELFRPPEVV YGQDSSLTPP VTATAEEEGG DPDVDDDFRR SFYMDEDDVF  180
GMPGLLASMA EGMMLPPPVD SLGSYGNDDD DDMAGDVSLW SYSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14471051271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027412
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028683.12e-81LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ934e-79DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2P5C9S52e-79A0A2P5C9S5_TREOI; AP2/ERF domain containing protein
TrEMBLA0A2P5D9F61e-79A0A2P5D9F6_PARAD; AP2/ERF domain containing protein
STRINGLus100274121e-165(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.16e-63C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]