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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lus10027404 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 199aa MW: 21468.3 Da PI: 9.4976 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10027404 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90.2 | 1e-28 | 3 | 52 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ien++ rqvtfskRrng+lKKA+ELSvLCdaev v++fs++g+lye+ss
Lus10027404 3 KIENTTSRQVTFSKRRNGLLKKANELSVLCDAEVGVVVFSQRGRLYEFSS 52
69**********************************************96 PP
|
| 2 | K-box | 31.9 | 5.5e-12 | 73 | 128 | 5 | 60 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLek 60
s++s+++ +++l+qe+a L ++i+ Lq + R+llGe+Le ++l+e++ ++Le+
Lus10027404 73 SNSSAASCIQQQLKQESASLANKIDLLQASTRRLLGEGLECCTLEEIKDTNDKLET 128
455566667899***************************************99996 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 199 aa
Download sequence Send
to blast |
MRKIENTTSR QVTFSKRRNG LLKKANELSV LCDAEVGVVV FSQRGRLYEF SSHGMDKTIA 60
RYKKYATVEI NRSNSSAASC IQQQLKQESA SLANKIDLLQ ASTRRLLGEG LECCTLEEIK 120
DTNDKLETRE GTARKEGKSV RKGTCGEMPW EPPPSIGGKG KEAVATAGSS NGASNDSSTV 180
VVTTLSIGLP TATHYIGH*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3kov_A | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 2e-17 | 3 | 84 | 9 | 90 | Myocyte-specific enhancer factor 2A |
