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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10027394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28786.6 Da PI: 9.5985 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2.1e-12 | 78 | 130 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er+RR+++ ++ Lr+llP + ++K s ++ +Av+YIk+L+ Lus10027394 78 KKVLHRDVERQRRQEMSALYASLRSLLPLEF--VKGKRSMSDHMNEAVNYIKQLE 130 5788*************************65..********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-13 | 71 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.738 | 77 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.05E-11 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 79 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-5 | 83 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MFPLHQGNEL CFQIDSIPQQ DLILPPTTTT STNLLHNYHL HGTTTATGRR RRENPATAAM 60 ENNNGNSGAG GATTTNIKKV LHRDVERQRR QEMSALYASL RSLLPLEFVK GKRSMSDHMN 120 EAVNYIKQLE RRIKELEGKR NEVNVLTNGN GNGNNNAAAV LTNGSAGTKS SVEVRRCLAG 180 VEVFLTSPAE VGWRLSGVMR VMAEEGLTVV NCNSTKVNRT CFHTLHAEVE DPTNLNLRGL 240 QQKLIPLIVP PSSSVDQHAW K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10027394 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090357.1 | 2e-68 | transcription factor bHLH118 | ||||
TrEMBL | A0A067JQS6 | 4e-67 | A0A067JQS6_JATCU; Uncharacterized protein | ||||
STRING | Lus10027394 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10027394 |