PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027291
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 350aa    MW: 37043.2 Da    PI: 7.0998
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027291genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.1e-30128181155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Lus10027291 128 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 181
                  59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.67E-20125185IPR009057Homeodomain-like
PROSITE profilePS5129411.059125184IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-30127186IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-24129181IPR006447Myb domain, plants
PfamPF002491.4E-7131180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRDDESNWFA RWDEELPSPD ELMPITQTLI TPDLALAFDI RTTPTTGTTS PPTAAVAAVN  60
NSLHHNQPLP TPPPPPPPSL PAGSLPSPNT NPNNNPNSLA NSSEFAPDSS AELGSGTGGD  120
EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR  180
LYLKRMQGLS SSAANAMSSS AANGVGGGSS SSTSGVDAAT DHLFASSPVP AHFLHPAAAV  240
AGRPPNSDHF LPFVPVTALQ HHHHYQQMAA VGGHPGQYHH RQMGHFGSAP TNGQFDHHPF  300
LARQQATHRM GPPARNAVPA GYNVEDLESA TNGNGGGRKV LTLFPTADD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-32128184157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027291
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162796.11e-116PREDICTED: transcription factor PCL1-like
SwissprotO222109e-62MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2P2JJL71e-119A0A2P2JJL7_RHIMU; Uncharacterized protein
STRINGLus100272910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.14e-69G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]