PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026986
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 457aa    MW: 52066.2 Da    PI: 4.434
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026986genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-0757114348
                      SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqkyl 48 
                       WTt E ++lv+++    g+          Wk++a   +    +R l+qc+++w+++l
      Lus10026986  57 DWTTKESLILVNVIVAIDGDwlrvlsshqKWKSVADNCNlldVRRNLYQCREKWRSLL 114
                      6******************************************************986 PP
2trihelix38.82.5e-1258136281
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                  Wt +e l L+++   ++ +  r  +  ++W++v++++    ++r+  qC+ekw++l  +y +ik++++k  + + +  py
  Lus10026986  58 WTTKESLILVNVIVAIDGDWLRVLSSHQKWKSVADNCNLLDVRRNLYQCREKWRSLLSEYHRIKQWNSKAGD-EGRDPPY 136
                  ********************************************************************9633.3334444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-956129No hitNo description
Gene3DG3DSA:1.10.10.603.3E-457115IPR009057Homeodomain-like
PROSITE profilePS500907.52658114IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEEAEPISDR ESSLEPKRRG KNPEPESKGA DVAEEEDEVM PADRTTTRMT RSRASPDWTT  60
KESLILVNVI VAIDGDWLRV LSSHQKWKSV ADNCNLLDVR RNLYQCREKW RSLLSEYHRI  120
KQWNSKAGDE GRDPPYWSLD REKRKLLELP PSFDYEVFKA IDTYFSTKRE ELDSDTDTDP  180
EADAELLEVI AKLEVGLGHI EPLFPGSKSK RRKRCRAVLE KEEGLPEELS RPCSPEEKPP  240
TYDLGENPEE SRVGETHPEE GHTHETCEPE EEEHTDETCE PEEEEHTDET CEPEEEHEQT  300
SDKNVAIKDE EVHESHVEEG IPQEIPEEGD KNGAAREGIS GERKAQSYES VTTTPSEGEK  360
GLSQGVVRPY KRGRKPKALV EEEKMVEQVL ENSQLVLSVA TGSYPRETET TGDHLKDGEG  420
SSEREFVRYQ ADKLVECLGR IVNILGRHPY LVEKYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026986
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100269860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.16e-39sequence-specific DNA binding transcription factors