PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026920
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 596aa    MW: 67758.1 Da    PI: 8.3127
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026920genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09538582345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+tl+qck ++ 
      Lus10026920 538 VWSAVQERALVQALKTFPKDanqRWERVAAAVP-GKTLNQCKKKFA 582
                      7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007615.30640122IPR001623DnaJ domain
SMARTSM002719.4E-741114IPR001623DnaJ domain
PRINTSPR006252.5E-84563IPR001623DnaJ domain
PfamPF002266.8E-1553119IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.0E-1854140IPR001623DnaJ domain
SuperFamilySSF465653.14E-1754145IPR001623DnaJ domain
CDDcd062575.78E-1054111IPR001623DnaJ domain
PRINTSPR006252.5E-86378IPR001623DnaJ domain
PRINTSPR006252.5E-894114IPR001623DnaJ domain
PROSITE patternPS00636099118IPR018253DnaJ domain, conserved site
SuperFamilySSF466893.74E-7398447IPR009057Homeodomain-like
PROSITE profilePS500905.75398444IPR017877Myb-like domain
SMARTSM007176.5E-6402455IPR001005SANT/Myb domain
PfamPF002491.4E-5404446IPR001005SANT/Myb domain
CDDcd001671.53E-4405447No hitNo description
PROSITE profilePS512939.714534589IPR017884SANT domain
SMARTSM007171.6E-8535587IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-9537590IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-5537581IPR009057Homeodomain-like
PfamPF002492.2E-7538581IPR001005SANT/Myb domain
CDDcd001671.13E-6539585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVRNSLRLIS YSQELVDGQP LFVSSNCFPV KAKNYDPAGH AFHAAALKLV GYLATEEQIR  60
KSYREVALKY HPDKQAALLL AEETEAAKQA KKEQIESHFK AIQEAYEALI DPVKRRVYDS  120
TDEFDDEVPT DCAPQDFFKV FGPAFVRNGR WSVSQPVPPL GDDATPFKEV DSFYDFWYSF  180
KSWREFPHED EFDLEDAESR DHKRWMERQN AKLSEKARKE DYARIRTLVD NAYRRDPRIQ  240
KRKEEEKAEK QRKKEAKYLA KKLQEEEAAK AAEEEQRRKE EEGKRAAEAA SLQKKAKEKE  300
KKLLRKERAR LRTFSAPVLS DRFLGVTEDD VENLCMSLDM EQMRGLCDKL EGQEPLEKAN  360
LLKNACGHDQ EAENHKGDQK KTPQQNGSAS NGGFHGSSYS SKEKPWLREE IELLRKGMQK  420
FPKGTSRRWE VISDYIGTGR SVEQIIKATK TVLLQKPDSA KAFDSFLEKR KPAASIASPL  480
TTREEMGLVN PQSSEDNAVK VDNTEEAPSL SLDNPKTDDG NSATNTTPSS ASSSEQDVWS  540
AVQERALVQA LKTFPKDANQ RWERVAAAVP GKTLNQCKKK FALLKDSFRS KKTTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1913624020124Zuotin
5dje_B2e-1913624020124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGLus100269200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-103DnaJ domain ;Myb-like DNA-binding domain