PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026919
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 651aa    MW: 73625.6 Da    PI: 8.4151
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026919genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09593637345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
      Lus10026919 593 VWSAVQERALVQALKTFPKDanqRWERVAAAVP-GKTVNQCKKKFA 637
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.93E-2089172IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.3E-2191192IPR001623DnaJ domain
SMARTSM002713.0E-1593168IPR001623DnaJ domain
PfamPF002261.4E-1794173IPR001623DnaJ domain
CDDcd062572.98E-1394165IPR001623DnaJ domain
PROSITE profilePS5007618.66994176IPR001623DnaJ domain
PRINTSPR006253.0E-899117IPR001623DnaJ domain
PRINTSPR006253.0E-8117132IPR001623DnaJ domain
PRINTSPR006253.0E-8148168IPR001623DnaJ domain
PROSITE patternPS006360153172IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.262453496IPR017877Myb-like domain
SuperFamilySSF466894.37E-6454502IPR009057Homeodomain-like
SMARTSM007171.9E-4457510IPR001005SANT/Myb domain
CDDcd001670.00321460502No hitNo description
PROSITE profilePS5129311.093589644IPR017884SANT domain
SuperFamilySSF466896.08E-9589637IPR009057Homeodomain-like
SMARTSM007175.0E-9590642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5591636IPR009057Homeodomain-like
PfamPF002491.3E-7593636IPR001005SANT/Myb domain
CDDcd001677.29E-7594640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MMVQSSLRLI SYSQELVDGQ PLFVSSNCFP VKAKNYDPAG HAFHAAALKL VGHEEAVDSK  60
EDSVSKDKEQ THMPSAESYS SKGKKKGTGE NQQDHYALLG LSHLRYLATE EQIRKSYREV  120
ALKYHPDKQA ALLLAEETEA GKLAKKEQIE SHFKAIQEAY EALIDPVKRR IYDSTDEFDD  180
EVPTDCAPRD FFKVFGPAFV RNGRWSVSQP VPPLGDDSTP FKDVDNFYDF WYTFKSWREF  240
PHADEFDLEQ AESRDHKRWM ERQNAKLSEK ARKEEYARIR TLVDNAYRKD PRVQKRKEEE  300
KAEKQRKKEA KYLAKKMQEE EAAKAAEEEQ RRKEEEGKRA AEAASLQKKA KEKEKKLLRK  360
ERARLRTLSA PVLAVRLLGL TEDDVENLCM SLDTEQMRSL CEKMEGQESS EKANLLKNAC  420
GHEQEAETHK GDQKKTAQQN GPVSNGGFHG SSSCRSKEKP WLREEIELLR KGMLKFPKGT  480
SRRWEVISDY IGTGRSVEEI IKATKTVLLQ KPDSAKAFDS FLEKRKPAVS IASPLTTREE  540
VGLVNPQSSE DNAAKVDNTE EAPSLSSDNS KTDDGNSAAN TTPSSSSSSE QDVWSAVQER  600
ALVQALKTFP KDANQRWERV AAAVPGKTVN QCKKKFALLK ESFRSKKSTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1719029420124Zuotin
5dje_B1e-1719029420124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026919
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299170.20.0dnaJ homolog subfamily C member 2
RefseqXP_024442936.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2K2BRW20.0A0A2K2BRW2_POPTR; Uncharacterized protein
STRINGLus100269190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain