PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10026611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 389aa MW: 42953.4 Da PI: 8.5755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 78 | 123 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ Lus10026611 78 RGHWRPAEDSKLKELVSLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 123 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53 | 8e-17 | 130 | 173 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++++E+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Lus10026611 130 RRAFSEDEEERLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 173 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.996 | 73 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-14 | 77 | 126 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.31E-27 | 78 | 171 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-15 | 78 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 79 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-12 | 81 | 122 | No hit | No description |
PROSITE profile | PS51294 | 26.222 | 125 | 179 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-13 | 129 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 130 | 172 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-20 | 132 | 178 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-10 | 132 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MKPWPERTEA HHTSSCSSPM VAMVNADIAS LTLSSASPAS LFPSDCTTTT TTSNEEDNKI 60 KETTLVLTEC GQSKLCARGH WRPAEDSKLK ELVSLYGPQN WNLIAEKLEG RSGKSCRLRW 120 FNQLDPRINR RAFSEDEEER LMQAHRVYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR 180 EQSSAYSRRK LSNSNGNGNG NGGSCSNNSG GDSGSNNSYN NNTYSSSSPP CSRMDEMMMM 240 IPTASLFHQN QVGGDQQHHF INGGRGIIKG GGGFVVPHQQ TTFDFFPGGK SSSNEMMIMG 300 MLSQSRSCWD HHQYHQSNGN NNNNNLAIQQ SNYSLNQRIH HPTHHRMVIS SSSSFGDHQE 360 RSSSSSAVVS SSSNNPPPFI DFLGVGAT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-33 | 78 | 178 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10026611 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895032.1 | 1e-101 | transcription factor CSA-like | ||||
TrEMBL | A0A2P5XVG3 | 2e-92 | A0A2P5XVG3_GOSBA; Uncharacterized protein | ||||
TrEMBL | D9ZJ60 | 1e-92 | D9ZJ60_MALDO; MYB domain class transcription factor | ||||
STRING | Lus10026611 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-76 | myb domain protein 105 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10026611 |